Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   G3M69_RS00935 Genome accession   NZ_CP048599
Coordinates   199121..200329 (-) Length   402 a.a.
NCBI ID   WP_163562752.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194121..205329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS00910 (G3M69_00910) - 194184..194702 (-) 519 WP_000760576.1 hypothetical protein -
  G3M69_RS00915 (G3M69_00915) - 194699..195643 (-) 945 WP_000362459.1 CpaF/VirB11 family protein -
  G3M69_RS00920 (G3M69_00920) - 195648..195923 (-) 276 WP_001278752.1 hypothetical protein -
  G3M69_RS00925 (G3M69_00925) - 195940..196902 (-) 963 WP_163562750.1 hypothetical protein -
  G3M69_RS00930 (G3M69_00930) - 196915..199137 (-) 2223 WP_163562751.1 collagen-like protein -
  G3M69_RS00935 (G3M69_00935) comB10 199121..200329 (-) 1209 WP_163562752.1 DNA type IV secretion system protein ComB10 Machinery gene
  G3M69_RS00940 (G3M69_00940) - 200326..201981 (-) 1656 WP_163562753.1 TrbG/VirB9 family P-type conjugative transfer protein -
  G3M69_RS00945 (G3M69_00945) - 201978..203114 (-) 1137 WP_163562754.1 VirB8/TrbF family protein -
  G3M69_RS07955 - 203107..203247 (-) 141 WP_000789926.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44909.43 Da        Isoelectric Point: 9.9914

>NTDB_id=369642 G3M69_RS00935 WP_163562752.1 199121..200329(-) (comB10) [Helicobacter pylori strain GCT 97]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKSATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLSQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=369642 G3M69_RS00935 WP_163562752.1 199121..200329(-) (comB10) [Helicobacter pylori strain GCT 97]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCACACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAATCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACACCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGTCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(178-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.174

97.264

0.507