Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3M69_RS00105 Genome accession   NZ_CP048599
Coordinates   23611..24078 (+) Length   155 a.a.
NCBI ID   WP_039085187.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 18611..29078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS00085 (G3M69_00085) dnaK 18733..20595 (+) 1863 WP_163562676.1 molecular chaperone DnaK -
  G3M69_RS00090 (G3M69_00090) - 20821..21376 (-) 556 Protein_18 hypothetical protein -
  G3M69_RS00095 (G3M69_00095) - 21491..22408 (+) 918 WP_163562677.1 O-acetylserine-dependent cystathionine beta-synthase -
  G3M69_RS00100 (G3M69_00100) - 22433..23575 (+) 1143 WP_163562678.1 cystathionine gamma-synthase -
  G3M69_RS00105 (G3M69_00105) luxS 23611..24078 (+) 468 WP_039085187.1 S-ribosylhomocysteine lyase Regulator
  G3M69_RS00110 (G3M69_00110) - 24291..25967 (+) 1677 WP_341534299.1 5'-nucleotidase C-terminal domain-containing protein -
  G3M69_RS00115 (G3M69_00115) tlpB 26178..27875 (+) 1698 WP_163562680.1 methyl-accepting chemotaxis protein TlpB -
  G3M69_RS00120 (G3M69_00120) - 27906..28697 (+) 792 WP_163562681.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17708.22 Da        Isoelectric Point: 7.1165

>NTDB_id=369632 G3M69_RS00105 WP_039085187.1 23611..24078(+) (luxS) [Helicobacter pylori strain GCT 97]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=369632 G3M69_RS00105 WP_039085187.1 23611..24078(+) (luxS) [Helicobacter pylori strain GCT 97]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACA
TGCCAAGCCTGCACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGGTTTTATTTAACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
AATGCAAGACGTGTTAAAGGCTAAAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCCAAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

90.968

0.387

Multiple sequence alignment