Detailed information NTG0036963

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PRU_RS08455
• Genome accession: NC_014033
• Coordinates: 1965516..1966916 (+)
• Length: 466 a.a.
• NCBI ID: WP_013063321.1
• Uniprot ID: D5ETH5
• Organism: Xylanibacter ruminicola 23
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1960516..1971916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PRU_RS15330 (PRU_1630)	-	1961217..1962371 (+)	1155	WP_013065690.1	acyltransferase family protein	-
PRU_RS08445 (PRU_1631)	-	1962316..1964505 (-)	2190	WP_013064751.1	tetratricopeptide repeat protein	-
PRU_RS08450 (PRU_1632)	-	1964509..1965429 (-)	921	WP_041385987.1	ABC transporter substrate-binding protein	-
PRU_RS08455 (PRU_1633)	radA	1965516..1966916 (+)	1401	WP_013063321.1	DNA repair protein RadA	Machinery gene
PRU_RS08460 (PRU_1634)	-	1967076..1968347 (+)	1272	WP_013065257.1	phosphoglycerate kinase	-
PRU_RS08465 (PRU_1635)	-	1968519..1970450 (+)	1932	WP_013064116.1	glycoside hydrolase family 97 protein	-

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 50598.19 Da
• Isoelectric Point: 6.8992

>NTDB_id=36963 PRU_RS08455 WP_013063321.1 1965516..1966916(+) (radA) [Xylanibacter ruminicola 23]
MAKDKIAYVCSNCGQESPKWIGKCPACGQWNTFKEIKVAPSSTPKTAAARGGLSAGTSAQSSALHAGKVLRLRDISSKDD
PRIDMHDAELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQTMLNMPEKKILYVSGEESAHQLKMRAERLGGENENFLLLT
ENSLETIFDHIKEVQPELIVIDSIQTISTEDVESSAGSIAQVRECASALLRFAKTSGVPVILIGHITKEGTLAGPKILEH
IVDTVIQFEGDQHYMYRILRSIKNRFGSTAELGIYEMLQNGLRQVSNPSELLLTQDRDGLSGIAITSAIEGIRPFLVETQ
ALVSTAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLAQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIESGWC
MAGEVGLSGEVRPVNRIEQRIAEAEKLGFTDMIIPKYNLQGFDKNKYSIRLHPVRKVEEALRAIFG

Nucleotide

• Length: 1401 bp

>NTDB_id=36963 PRU_RS08455 WP_013063321.1 1965516..1966916(+) (radA) [Xylanibacter ruminicola 23]
ATGGCAAAAGATAAGATAGCATACGTTTGTTCCAACTGCGGACAGGAATCGCCTAAGTGGATTGGCAAGTGCCCTGCCTG
CGGACAATGGAACACGTTTAAGGAGATAAAAGTAGCTCCCAGTTCAACCCCTAAAACGGCTGCAGCAAGGGGCGGTTTAA
GCGCGGGCACATCAGCCCAGTCGTCGGCTTTGCATGCAGGTAAGGTGCTGCGATTGCGCGACATCAGTTCAAAGGACGAC
CCACGTATCGACATGCACGATGCCGAACTGAACCGTGTACTGGGTGGCGGATTGGTGCCTGGAAGTATCGTGCTGCTAGG
TGGCGAGCCTGGTATCGGCAAATCAACCCTTTCGCTACAAACGATGCTGAACATGCCCGAGAAGAAGATTCTATACGTGA
GCGGTGAGGAAAGCGCCCATCAGCTAAAGATGCGTGCAGAACGACTGGGTGGCGAAAACGAGAACTTCCTGCTACTTACC
GAGAACTCGCTCGAAACTATCTTCGACCATATTAAAGAGGTACAGCCCGAACTGATTGTGATCGACTCGATACAAACCAT
CTCTACCGAGGATGTTGAGTCGAGTGCAGGCTCTATCGCACAGGTGCGCGAGTGCGCTTCAGCCCTACTCCGTTTTGCCA
AAACCAGCGGTGTGCCCGTAATCCTGATTGGTCACATCACCAAAGAGGGCACCTTGGCAGGTCCTAAAATCCTCGAGCAT
ATTGTGGATACAGTTATCCAGTTCGAAGGCGACCAGCACTATATGTACCGCATTCTGCGCAGCATCAAGAACCGCTTTGG
TTCTACAGCCGAACTGGGCATCTACGAGATGCTGCAGAACGGATTGCGACAGGTATCGAACCCATCCGAACTGCTACTCA
CACAGGATCGCGACGGCCTTTCGGGCATCGCCATCACATCGGCCATCGAGGGTATTCGTCCGTTCTTAGTCGAGACGCAG
GCCCTTGTTTCAACAGCCGCCTACGGCACCCCTCAGCGTTCGGCCACAGGCTTTGATCAGCGCCGACTGAACATGCTACT
GGCTGTGCTTGAAAAGCGCGTGGGCTTTAAGCTGGCACAGAAGGATGTGTTTGTGAATATTGCAGGCGGACTTCGTGTTA
CCGACTTGGCGATGGACCTGAGTGTGATTGCGGCTGTGCTCTCATCTAATGTTGATACACCTATCGAGTCAGGTTGGTGC
ATGGCAGGCGAGGTTGGACTGAGTGGCGAGGTGCGCCCTGTCAACCGTATCGAGCAGCGAATTGCCGAGGCCGAGAAGCT
CGGATTTACCGATATGATTATCCCCAAATACAACCTTCAGGGCTTCGATAAGAATAAATATTCAATCCGTTTGCACCCTG
TAAGAAAGGTGGAAGAAGCCCTACGTGCAATCTTCGGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (82-230)

• Subunit ChlI of Mg-chelatase (ChlI) (349-438)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: D5ETH5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.149	100	0.496
radA	Streptococcus mitis NCTC 12261	45.064	100	0.451
radA	Streptococcus pneumoniae Rx1	45.064	100	0.451
radA	Streptococcus pneumoniae D39	45.064	100	0.451
radA	Streptococcus pneumoniae R6	45.064	100	0.451
radA	Streptococcus pneumoniae TIGR4	45.064	100	0.451
radA	Streptococcus mitis SK321	44.85	100	0.449