Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   FY128_RS01635 Genome accession   NZ_CP048593
Coordinates   346238..348058 (-) Length   606 a.a.
NCBI ID   WP_080799292.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But001     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 341238..353058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS01610 (FY128_01615) - 341917..342156 (+) 240 WP_019564234.1 DUF4170 domain-containing protein -
  FY128_RS01615 (FY128_01620) waaA 342372..343694 (+) 1323 WP_004432170.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FY128_RS01620 (FY128_01625) - 343688..344425 (+) 738 WP_115064354.1 HAD family hydrolase -
  FY128_RS01625 (FY128_01630) lpxK 344590..345636 (+) 1047 WP_333717134.1 tetraacyldisaccharide 4'-kinase -
  FY128_RS01630 (FY128_01635) - 345866..346087 (-) 222 WP_003519053.1 DUF2093 domain-containing protein -
  FY128_RS01635 (FY128_01640) hexB 346238..348058 (-) 1821 WP_080799292.1 DNA mismatch repair endonuclease MutL Machinery gene
  FY128_RS01640 (FY128_01645) - 348466..350085 (+) 1620 WP_162714258.1 response regulator -
  FY128_RS01645 (FY128_01650) - 350228..351580 (+) 1353 WP_003519050.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  FY128_RS01650 (FY128_01655) - 351675..352562 (-) 888 WP_113472836.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65046.72 Da        Isoelectric Point: 6.2864

>NTDB_id=369601 FY128_RS01635 WP_080799292.1 346238..348058(-) (hexB) [Agrobacterium tumefaciens strain But001]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAVSGNMQFAEAVQSRFSDITMPTARAEPSE
VYEASASPSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=369601 FY128_RS01635 WP_080799292.1 346238..348058(-) (hexB) [Agrobacterium tumefaciens strain But001]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCGGGCGGTGGCAAGGGACTGG
TCCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGACGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCTGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAGACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACGCTTGAAATCCCCTCCACCGGCGACGATCACCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGGGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCCGAAACCGTACCGCACGGGCGATATCCGGTCGCAGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTTCGCGATCCCGGCCTCGTTCGCGGACTGATCGTCGGTGCGATC
CGCCAGGCGCTGACTCGTGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCGTTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCCAGCGAG
GTTTACGAGGCCTCTGCAAGCCCGTCGCTGGAACCGTCACAATATCCGCTCGGCGCCGCGCGGGCGCAGTTGCACCAGAA
TTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGACCAGCATGCGGCGCATGAACGGCTCGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATCATCGACCTTCCCGAAGAGGAT
TGCGACAGGCTGATGGACCATGCGGCTGGTTTCGATGCGCTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCGGCGATGCTTGGCGAGGTTAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCTACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTACGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(416-562)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.326

100

0.361