Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FY128_RS00735 Genome accession   NZ_CP048593
Coordinates   155224..155589 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain But001     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 150224..160589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS00720 (FY128_00725) - 152439..152816 (-) 378 WP_038489792.1 hypothetical protein -
  FY128_RS00725 (FY128_00730) - 153333..154928 (+) 1596 WP_244420493.1 methyl-accepting chemotaxis protein -
  FY128_RS00730 (FY128_00735) - 154928..155227 (+) 300 WP_003514997.1 STAS domain-containing protein -
  FY128_RS00735 (FY128_00740) scnR 155224..155589 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  FY128_RS00740 (FY128_00745) - 155606..157873 (+) 2268 WP_141193533.1 chemotaxis protein CheA -
  FY128_RS00745 (FY128_00750) cheR 157887..158795 (+) 909 WP_019564320.1 protein-glutamate O-methyltransferase CheR -
  FY128_RS00750 (FY128_00755) cheB 158792..159847 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  FY128_RS00755 (FY128_00760) cheY2 159847..160236 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=369600 FY128_RS00735 WP_003493773.1 155224..155589(+) (scnR) [Agrobacterium tumefaciens strain But001]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=369600 FY128_RS00735 WP_003493773.1 155224..155589(+) (scnR) [Agrobacterium tumefaciens strain But001]
GTGAAGAAAAAAGTTCTTACTGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364