Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FY129_RS12990 Genome accession   NZ_CP048589
Coordinates   2655049..2656857 (+) Length   602 a.a.
NCBI ID   WP_262576202.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650049..2661857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY129_RS12990 (FY129_12920) recQ 2655049..2656857 (+) 1809 WP_262576202.1 DNA helicase RecQ Machinery gene
  FY129_RS12995 (FY129_12925) - 2656902..2658134 (-) 1233 WP_107674692.1 ROK family transcriptional regulator -
  FY129_RS13000 (FY129_12930) - 2658398..2659420 (+) 1023 WP_003507133.1 sugar ABC transporter substrate-binding protein -
  FY129_RS13005 (FY129_12935) - 2659649..2660731 (+) 1083 WP_087743130.1 ABC transporter permease -
  FY129_RS13010 (FY129_12940) - 2660731..2661513 (+) 783 WP_003507135.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67068.75 Da        Isoelectric Point: 6.3336

>NTDB_id=369593 FY129_RS12990 WP_262576202.1 2655049..2656857(+) (recQ) [Agrobacterium tumefaciens strain But002]
MTADPLHILKTVYGYDVFRGRQAEIIQHVVAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPDERRGLWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAIMERDNPRAQLKRFLKDRDSESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTILPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=369593 FY129_RS12990 WP_262576202.1 2655049..2656857(+) (recQ) [Agrobacterium tumefaciens strain But002]
GTGACCGCTGATCCCTTGCATATCCTCAAGACCGTCTATGGCTACGATGTGTTTCGTGGGCGGCAGGCCGAAATCATCCA
GCACGTGGTGGCGGGCAATAATGCTTTCGTTTTGATGCCGACAGGTGGTGGGAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCACGCGACGGTATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTCGATCAGGTCGCTGCTCTGCGTCAGGCG
GGCGTGCGGGCAGAAGCCCTCAACTCCGATCTTTCTCCGGATGAGCGGCGCGGGCTCTGGCGGGATATGCGGGCCGGTAA
AGTCGACATTCTTTATGCCGCACCGGAAACCCTTCTCAAGCCGGATGTCCTGGACGCTCTCCAGCCCATTGCCCTGTCGT
TGATCGCTATCGACGAAGCCCATTGTCTGTCTCAATGGGGGCATGATTTCCGGCCACCCTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCAACGGCCGATGGGCCTACGCGCACCGAAATTCTCGGTCA
CCTGGGAATCGAAGAGGATGACGCCTTCATCGCCGGCTTCGATAGGCCCAATATCCGCTATGCGATCATGGAAAGGGATA
ATCCACGCGCGCAGCTGAAGCGCTTTTTGAAGGACCGCGACAGTGAAAGCGGGATCGTCTATTGCCTTTCCAAACGGAAG
GTGGACGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGATGCACTGCCCTATCACGCTGGGATGGACAAGGCCGCCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGCATGGGCATAGACA
AGCCCGATGTGCGCTTCGTCGTTCATATTGATCTGCCCGGCAGCATCGAAGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGATGGTCTGCCATCGGACGTACTCATGCTCTACGGTTACGAAGACATCGCCCTGCGCAACCGCTTTATCGAAGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGACGCGCTGCTCGGCCTTGCGGAAACCGCGAGCTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTGAGCCCTGCGGCAATTGCGATACCTGCGCCGAGCCGCCCGAC
CTGTTTGACGGGGCCATAGCCGCACAGAAGCTTCTGTCCTGCATTTATCGCACGGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTGTTGCTGGGTGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGCA
AGGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGG
CATGGTGGACTGTCCATTTCCGAGGACGGACGGCGTTTCCTGCGTGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCTGCCCGGCAACAGACGCCCCGCAACACGGTATCGACGATTTTGCCTGAAGCTGATCGCAGTCTTTTTGAGG
CTCTGCGTGCGAAGCGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTATGTGATTTTCCACGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCCGCGAAGGAAATGGCTGGGATTCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCAGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.584

99.003

0.372

Multiple sequence alignment