Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SRM_RS13930 Genome accession   NC_014032
Coordinates   3186408..3187787 (-) Length   459 a.a.
NCBI ID   WP_043553458.1    Uniprot ID   A0A9X2R6M0
Organism   Salinibacter ruber M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3181408..3192787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRM_RS13905 (SRM_02711) - 3181780..3182178 (+) 399 WP_011405207.1 RidA family protein -
  SRM_RS13910 (SRM_02712) - 3182195..3182746 (-) 552 WP_013062681.1 hypothetical protein -
  SRM_RS13915 (SRM_02713) - 3182831..3184117 (-) 1287 WP_013062682.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SRM_RS17900 - 3184267..3185010 (-) 744 WP_231847175.1 hypothetical protein -
  SRM_RS17905 - 3185061..3185612 (-) 552 WP_231847176.1 hypothetical protein -
  SRM_RS13925 (SRM_02715) - 3185661..3186266 (-) 606 WP_013062684.1 RNA polymerase sigma factor -
  SRM_RS13930 (SRM_02716) radA 3186408..3187787 (-) 1380 WP_043553458.1 DNA repair protein RadA Machinery gene
  SRM_RS13935 (SRM_02717) - 3188024..3188776 (+) 753 WP_011405213.1 MlaE family ABC transporter permease -
  SRM_RS13940 (SRM_02718) - 3188843..3189613 (+) 771 WP_013062686.1 ABC transporter ATP-binding protein -
  SRM_RS13945 (SRM_02719) - 3189671..3190603 (+) 933 WP_013062687.1 MlaD family protein -
  SRM_RS13950 (SRM_02720) - 3190652..3191845 (+) 1194 WP_013062688.1 DUF445 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49312.74 Da        Isoelectric Point: 4.5825

>NTDB_id=36958 SRM_RS13930 WP_043553458.1 3186408..3187787(-) (radA) [Salinibacter ruber M8]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTDVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPGRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=36958 SRM_RS13930 WP_043553458.1 3186408..3187787(-) (radA) [Salinibacter ruber M8]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAACACGCTCGTGAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAGCCGACCCAGCTGACGGACGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTCGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGGGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AGCGACAGGTCAAGCTGCGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACAAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGGCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTCACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATTGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGAGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTACG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATTCTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTCATCAACGTGGCTGGGGGGGTCAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAAGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGCGACTACGACATCGACGTGACCGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)

KaiC (ATPase)

(79-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis NCTC 12261

50.217

100

0.503
  radA Streptococcus mitis SK321

50.217

100

0.503
  radA Streptococcus pneumoniae Rx1

50.217

100

0.503
  radA Streptococcus pneumoniae D39

50.217

100

0.503
  radA Streptococcus pneumoniae R6

50.217

100

0.503
  radA Streptococcus pneumoniae TIGR4

50.217

100

0.503

Multiple sequence alignment