Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FY129_RS05530 Genome accession   NZ_CP048589
Coordinates   1091916..1092638 (-) Length   240 a.a.
NCBI ID   WP_060724145.1    Uniprot ID   A0A822UWS7
Organism   Agrobacterium tumefaciens strain But002     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086916..1097638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY129_RS05520 (FY129_05480) - 1088386..1090818 (+) 2433 WP_262576518.1 ComEC/Rec2 family competence protein -
  FY129_RS05525 (FY129_05485) - 1090838..1091515 (-) 678 WP_262576519.1 glutathione S-transferase family protein -
  FY129_RS05530 (FY129_05490) dinR/lexA 1091916..1092638 (-) 723 WP_060724145.1 transcriptional repressor LexA Regulator
  FY129_RS05535 (FY129_05495) - 1092850..1093728 (+) 879 WP_209788023.1 VOC family protein -
  FY129_RS05540 (FY129_05500) kdsA 1093728..1094573 (+) 846 WP_107675511.1 3-deoxy-8-phosphooctulonate synthase -
  FY129_RS05545 (FY129_05505) eno 1094721..1095995 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  FY129_RS05550 (FY129_05510) - 1096300..1096617 (+) 318 WP_003502598.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25944.88 Da        Isoelectric Point: 9.3311

>NTDB_id=369573 FY129_RS05530 WP_060724145.1 1091916..1092638(-) (dinR/lexA) [Agrobacterium tumefaciens strain But002]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKAKAPEAAPAPKTPANDLVGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=369573 FY129_RS05530 WP_060724145.1 1091916..1092638(-) (dinR/lexA) [Agrobacterium tumefaciens strain But002]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAAAGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGATGCACTCGATCTTGCCTCCAAATCCGGTATCCACCGGCTGATCACCGCCCTCGAAGAGCGCGGGTTTA
TTCGCCGGCTACCGAACAGGGCGCGAGCGCTGGAAGTCATCAAGCTGCCTGAGGCCTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCGTCATTGAAGGCAGCCTTGGCAAGGCCAAGGCGCCGGAAGCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTCGTCGGGGCCGTTACCGTGCCGGTCATGGGCCGCATTGCCGCCGGTGTGCCGATTTCCGCCATCCAGA
ACAATACCCACGATGTGGCCGTGCCTGTTGATATGCTCGGTTCGGGCGAACATTACGCTCTTGAGGTCAAGGGCGACTCG
ATGATCGAGGCCGGCATATTTGATGGCGATACCGTCATCATCCGCAATGGCAATACGGCAAATCCGGGTGATATCGTTGT
AGCGCTGGTGGATGATGAGGAAGCCACCCTGAAGCGTTTCCGTCGCAAGGGCGCCTCCATTGCGCTCGAGGCGGCAAACC
CGGCCTATGAAACGCGTATTTTTGGACCGGACCGGGTGAAAATCCAGGGCAAGCTGGTCGGACTGATCCGCCGTTACCAT
TGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-63)

Peptidase S24-like (Peptidase_S24)

(118-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UWS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363