Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   FY129_RS01650 Genome accession   NZ_CP048589
Coordinates   347579..349411 (-) Length   610 a.a.
NCBI ID   WP_111792533.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But002     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342579..354411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY129_RS01625 (FY129_01630) - 343270..343509 (+) 240 WP_003503155.1 DUF4170 domain-containing protein -
  FY129_RS01630 (FY129_01635) waaA 343725..345047 (+) 1323 WP_020010543.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FY129_RS01635 (FY129_01640) - 345041..345778 (+) 738 WP_111833678.1 HAD family hydrolase -
  FY129_RS01640 (FY129_01645) lpxK 345927..346973 (+) 1047 WP_111833677.1 tetraacyldisaccharide 4'-kinase -
  FY129_RS01645 (FY129_01650) - 347206..347427 (-) 222 WP_003503147.1 DUF2093 domain-containing protein -
  FY129_RS01650 (FY129_01655) hexB 347579..349411 (-) 1833 WP_111792533.1 DNA mismatch repair endonuclease MutL Machinery gene
  FY129_RS01655 (FY129_01660) - 349821..351440 (+) 1620 WP_162724039.1 response regulator -
  FY129_RS01660 (FY129_01665) - 351527..352879 (+) 1353 WP_003503140.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  FY129_RS01665 (FY129_01670) - 352985..353872 (-) 888 WP_099086149.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65518.38 Da        Isoelectric Point: 6.2095

>NTDB_id=369564 FY129_RS01650 WP_111792533.1 347579..349411(-) (hexB) [Agrobacterium tumefaciens strain But002]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
SDTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSSLRPSPSMAAPAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREIYGTAASPSSEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=369564 FY129_RS01650 WP_111792533.1 347579..349411(-) (hexB) [Agrobacterium tumefaciens strain But002]
ATGGCCATCAAGCAGCTTTCAGAAACCCTTATCAACCAGATCGCCGCCGGCGAGGTCATCGAGAGACCCTCCAGCGCCAC
GAAGGAACTGGTGGAAAACGCCATCGACGCTGGCGCGACCAGGATCGAGATCGCCACGGCGGGAGGCGGCAAGGGGCTGG
TGCGGATTACCGATAACGGTTCCGGCATGTCACCTGCCGATCTGGAGCTTGCGGTCAGGCGTCACTGCACCTCGAAAATT
TCCGATACGCTGGATGATATCCGCACGCTCGGGTTTCGTGGCGAGGCGCTGCCCTCCATCGGCTCGGTCGCCAAGCTGAC
GATTACCAGCCGCCAACAGGGCGCGGAACAGGGTTCGGTGATTTCCGTTACCGGCGGCAAGGTTTCCGATGTCCGGCCCG
CCGCCTCGAATGCCGGTACAATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCCGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCCGAGGCGGCCGCGATTACCGAAGTCGTCAAGCGCATGGCGATCGCCTTCCCGCATATCCGTTTCGTGCTATC
AGGCACCGACCGTTCGACGCTCGAAATTCCTTCGACCGGCGACGATCATCTGGCCCGCATGGCGCAGATTCTGGGTGCCG
AGTTCAAGGACAACGCCATCGAGATCGATGCCGGCCGCGAGGATGTGACGCTGACCGGTTTTGCCGGTGTTCCGACCTTC
AATCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAATGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCCGCCATTCG
CGGCGCTTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTTGACCCCGCCTTTGTGG
ATGTGAACGTGCATCCGGCGAAATCCGACGTGCGTTTTCGCGATCCCGGCCTCATTCGCGGGCTGATCGTCGGCGCGATC
CGTCAGGCGTTGACGCGCGACGGCGACAGGGCCGCGACGACGGGCGCGAGCCAGATGATGAATGCGTTCCGCCCCGGCTA
TAGCCCGTCCAGCCTCAGGCCCTCGCCTTCCATGGCAGCCCCCGCGCCGTGGTCCGCCGCCACCTCGCCGTCGCGGCCGC
TTGCGGTTTCCGGGGACATGCAATTTGCCGAGGCGGTGCAATCGCGCTTTTCCGACATCACCATGCCGACGGCGCGGGCC
GAGCCTCGGGAGATTTACGGGACCGCCGCGAGCCCCTCCTCGGAACCCGTGCTTTACCCGCTCGGCGCCGCGCGGGCGCA
GCTGCACGAGAACTACATCATCGCCCAGACGGAGAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAATGCCCTGCATTCCCGGCGTCCACCGTCACAGGTGCTGCTCATCCCTGAAATCATCGATTTG
CCGGAAGAGGATTGCGACCGGCTGATGGATCACGCCGCCGGGTTCGATGCACTGGGGCTCGTCATCGAACGTTTCGGGCC
GGGCGCGGTCGCCGTCCGGGAAACACCTGCCATGCTGGGTGAGGTCAATGTGCAGGGGCTGGTGCGTCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCGGCCACCATGGCCTGCCACGGCTCG
GTGCGTTCCGGCCGGCGTATGCGGCCGGAAGAGATGAACGCGCTTCTGCGGCAGATGGAAAACACGCCGGGTTCCGGTCA
ATGCAATCATGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.317

100

0.362