Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FY131_RS05560 Genome accession   NZ_CP048573
Coordinates   1125858..1128779 (+) Length   973 a.a.
NCBI ID   WP_003515263.1    Uniprot ID   A0A1B9UEG4
Organism   Agrobacterium tumefaciens strain cl001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120858..1133779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY131_RS05545 (FY131_05490) - 1123049..1123678 (+) 630 WP_003515260.1 MarC family protein -
  FY131_RS05550 (FY131_05495) - 1123802..1124950 (+) 1149 WP_111790237.1 HPP family protein -
  FY131_RS05555 (FY131_05500) ssb 1125017..1125550 (-) 534 WP_065687409.1 single-stranded DNA-binding protein Machinery gene
  FY131_RS05560 (FY131_05505) uvrA 1125858..1128779 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  FY131_RS05565 (FY131_05510) - 1128835..1129635 (+) 801 WP_111790238.1 DUF72 domain-containing protein -
  FY131_RS05570 (FY131_05515) dusA 1129641..1130600 (-) 960 WP_333717901.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FY131_RS05575 (FY131_05520) - 1131218..1132474 (+) 1257 WP_236761502.1 TylF/MycF/NovP-related O-methyltransferase -
  FY131_RS05580 (FY131_05525) - 1132845..1133339 (+) 495 WP_003515270.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107177.22 Da        Isoelectric Point: 6.7160

>NTDB_id=369540 FY131_RS05560 WP_003515263.1 1125858..1128779(+) (uvrA) [Agrobacterium tumefaciens strain cl001]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=369540 FY131_RS05560 WP_003515263.1 1125858..1128779(+) (uvrA) [Agrobacterium tumefaciens strain cl001]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
TAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTTGCCTTCGACACAATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGTCTTTCTCCAGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCCACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGCGTGCCATACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTTTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAGAAGTACAAACACGATATCGATGTGGTGGTGGACCGCGCCGTCGTGCGCC
CGGATATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTTGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACAATCCCGGAAATCGAGCCCCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGATGGTCTCGGCTCGCAGCAGAAGGTGGACGAAAACCTGATCGTGCCCGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAATCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCGCTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTCCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGCGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCTTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCGGCCCCCTGCCC
GGCCTGCGCAGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGGATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATACTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAATTCCGG
CACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCTTCGCAGATCGGCTCCGGCCTCACCGGCGTTCTCTATGTTC
TCGATGAGCCGTCCATCGGCCTGCATCAGCGTGACAATGCCCGCCTGCTCGATACGCTGAAGCACCTGCGCGACATCGGC
AATACGGTGATCGTGGTCGAACACGACGAGGATGCCATTCTGACGGCGGATTACGTTGTCGATATCGGCCCCGCCGCCGG
GATTCACGGCGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAAGTGATGGCCAATCCGAAGTCGCTGACCGGCAAATATC
TATCCGGCGAACTCGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCGAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAATAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGCGTTTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACCTTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGGGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACACCACGATCA
AACCCCGCCACCTACACCGGCGCATTCACGCCTATCCGCGACTGGTTCGCCGGTCTACCGGAGGCAAAGGCGCGAGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAAGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCGGATGTTTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTGGATGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAATTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTTGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCGAAACGCTCCACCGGCCGCACGCTCTACATCCTCGATGAGCCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTCTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGAACGCCGGAAGACATCGTCAAGAACGAGCGCTCCTATACCGGCCATTTCCTGAAGGAACTT
CTGGAACGCCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9UEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566