Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   FY133_RS02060 Genome accession   NZ_CP048564
Coordinates   425914..427746 (-) Length   610 a.a.
NCBI ID   WP_003503145.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Gle002     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420914..432746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY133_RS02035 (FY133_02035) - 421603..421842 (+) 240 WP_003503155.1 DUF4170 domain-containing protein -
  FY133_RS02040 (FY133_02040) waaA 422058..423380 (+) 1323 WP_020010543.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FY133_RS02045 (FY133_02045) - 423374..424111 (+) 738 WP_003503151.1 HAD family hydrolase -
  FY133_RS02050 (FY133_02050) lpxK 424261..425307 (+) 1047 WP_262514261.1 tetraacyldisaccharide 4'-kinase -
  FY133_RS02055 (FY133_02055) - 425541..425762 (-) 222 WP_003503147.1 DUF2093 domain-containing protein -
  FY133_RS02060 (FY133_02060) hexB 425914..427746 (-) 1833 WP_003503145.1 DNA mismatch repair endonuclease MutL Machinery gene
  FY133_RS02065 (FY133_02065) - 428156..429775 (+) 1620 WP_162709101.1 response regulator -
  FY133_RS02070 (FY133_02070) - 429862..431214 (+) 1353 WP_003503140.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  FY133_RS02075 (FY133_02075) - 431399..432286 (-) 888 WP_060726057.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65586.45 Da        Isoelectric Point: 6.0819

>NTDB_id=369452 FY133_RS02060 WP_003503145.1 425914..427746(-) (hexB) [Agrobacterium tumefaciens strain Gle002]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
SDTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSMAAPAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREIYETAASPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHSAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=369452 FY133_RS02060 WP_003503145.1 425914..427746(-) (hexB) [Agrobacterium tumefaciens strain Gle002]
ATGGCCATCAAGCAGCTTTCAGAAACCCTTATCAACCAGATCGCCGCCGGCGAGGTCATCGAGAGACCCTCCAGCGCCAC
GAAGGAACTGGTGGAAAACGCCATCGACGCTGGCGCGACCAGGATCGAGATCGCCACGGCGGGCGGCGGCAAGGGGCTGG
TGCGGATTACCGATAACGGTTCCGGCATGTCACCTGCCGATCTGGAGCTTGCGGTCAGGCGTCACTGCACCTCGAAAATT
TCCGATACGCTGGATGATATCCGCACGCTCGGGTTTCGTGGCGAGGCGCTGCCCTCCATCGGCTCGGTCGCCAAGCTGAC
GATTACCAGCCGCCAACAGGGCGCTGAACAGGGTTCGGTGATTTCCGTTACCGGCGGCAAGGTTTCCGATGTCCGGCCCG
CCGCCTCGAATGCCGGTACAATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCCGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCCGAGGCGGCCGCGATTACCGAAGTCGTCAAGCGTATGGCGATCGCCTTCCCGCATATCCGTTTCGTGCTATC
AGGCACCGACCGTTCGACGCTCGAAATTCCTTCGACCGGCGACGATCATCTGGCCCGCATGGCGCAGATTCTGGGCGCCG
AGTTCAAGGACAACGCCATCGAGATCGATGCCGGGCGCGAGGATGTGACGCTGACCGGTTTTGCCGGTGTTCCGACCTTC
AATCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCCGCCATTCG
CGGCGCTTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTTGACCCCGCCTTTGTGG
ATGTGAACGTGCATCCGGCGAAATCCGACGTGCGTTTTCGTGATCCCGGCCTCATTCGCGGGCTGATCGTCGGCGCGATC
CGCCAGGCGCTGACGCGCGACGGCGACAGGGCCGCGACGACGGGCGCGAGCCAGATGATGAATGCGTTCCGCCCCGGCTA
TAGCCCGTCCGGCCTCAGGCCCTCGCCTTCCATGGCAGCCCCCGCGCCGTGGTCCGCCGCCACCTCACCGTCGCGGCCGC
TTGCGGTTTCCGGGGACATGCAATTTGCCGAGGCGGTGCAATCGCGCTTTTCCGACATCACCATGCCGACGGCGCGGGCC
GAGCCTCGGGAGATTTACGAGACCGCCGCGAGCCCCTCGCCGGAACCTGTGCTTTACCCGCTCGGCGCTGCGCGGGCGCA
GCTGCACGAGAACTACATCATCGCCCAGACGGAAAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAATGCACTGCATTCCCGGCGTCCGCCGTCGCAGGTGCTGCTCATCCCTGAAATCATCGATTTG
CCGGAAGAGGATTGCGACCGGCTGATGGATCACTCCGCCGGGTTCGATGCGCTGGGGCTCGTCATCGAACGTTTCGGGCC
GGGCGCGGTCGCCGTCCGGGAAACGCCTGCCATGCTGGGTGAGGTCAATGTGCAGGGGCTGGTGCGTCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCGGCCACCATGGCCTGCCACGGCTCG
GTGCGTTCCGGCCGGCGTATGCGGCCGGAAGAGATGAACGCGCTTCTACGGCAGATGGAAAACACGCCGGGTTCCGGTCA
ATGCAATCATGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.056

100

0.361