Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FY138_RS13455 Genome accession   NZ_CP048543
Coordinates   2724211..2726019 (+) Length   602 a.a.
NCBI ID   WP_087743129.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain SJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719211..2731019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY138_RS13455 (FY138_13370) recQ 2724211..2726019 (+) 1809 WP_087743129.1 DNA helicase RecQ Machinery gene
  FY138_RS13460 (FY138_13375) - 2726078..2727310 (-) 1233 WP_099085774.1 ROK family transcriptional regulator -
  FY138_RS13465 (FY138_13380) - 2727574..2728596 (+) 1023 WP_003507133.1 sugar ABC transporter substrate-binding protein -
  FY138_RS13470 (FY138_13385) - 2728825..2729907 (+) 1083 WP_003507134.1 ABC transporter permease -
  FY138_RS13475 (FY138_13390) - 2729907..2730689 (+) 783 WP_020812786.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67034.75 Da        Isoelectric Point: 6.3341

>NTDB_id=369409 FY138_RS13455 WP_087743129.1 2724211..2726019(+) (recQ) [Agrobacterium tumefaciens strain SJ001]
MTADPLHILKTVYGYDVFRGRQAEIIQHVVAGNNAFVLMPTGGGKSLCYQIPALAREGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAILEKDNPRAQLKRFLKDRDGESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTILPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=369409 FY138_RS13455 WP_087743129.1 2724211..2726019(+) (recQ) [Agrobacterium tumefaciens strain SJ001]
GTGACCGCTGATCCCTTGCATATCCTCAAGACCGTCTATGGCTACGATGTGTTTCGTGGGCGGCAGGCCGAAATCATCCA
GCACGTGGTGGCGGGCAATAATGCTTTCGTTTTGATGCCGACTGGTGGTGGGAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCACGCGAGGGTATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTCGATCAGGTCGCTGCCCTGCGTCAGGCG
GGCGTGCGTGCGGAGGCTCTTAATTCCGATCTCTCTCCTGAAGAGCGGCGCGCGCTCTGGCGGGATATGCGGGCCGGTAA
AGTCGACATTCTTTATGCCGCACCGGAAACCCTTCTCAAGCCGGATGTCCTGGACGCCCTCCAGCCCATTGCCCTGTCGC
TGATCGCTATCGATGAAGCCCATTGCCTTTCTCAATGGGGGCATGATTTCCGGCCACCTTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCCACGGCCGACGGCCCCACGCGCACCGAAATTCTCGGTCA
CCTCGGAATTGAAGAGGACGACGCCTTCATCGCCGGGTTCGATAGGCCCAATATCCGCTATGCGATCTTGGAAAAGGATA
ATCCACGCGCGCAGTTGAAGCGCTTTCTGAAGGACCGCGACGGTGAAAGCGGCATCGTCTATTGCCTTTCCAAACGAAAG
GTGGATGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGACGCGCTGCCCTATCACGCTGGCATGGACAAGGCGGCCCG
CGAGGAGAACCAGACTCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGGATGGGCATAGACA
AGCCCGATGTGCGCTTCGTGGTTCATATCGATTTGCCCGGCAGCATCGAGGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGATGGCCTGCCGTCGGACGTACTCATGCTCTATGGCTACGAAGATATTGCCCTGCGTAATCGTTTCATCGAAGAGTC
TGATGCCGCAGACCAGCGCAAATATATGGAGCGCCAGAAGCTCGATGCGCTGCTCGGCCTTGCGGAAACCGCGAGTTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTGAGCCCTGCGGTAATTGCGATACCTGTGCCGAGCCGCCGGAC
CTGTTTGACGGAGCCATCGCCGCACAGAAGCTTCTGTCCTGTATTTATCGCACCGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGTGTGTTGCTGGGGGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGTA
AAGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGTATGATTGAAGTGGATCTGTCCGGG
CATGGTGGTCTGTCCATTTCCGAAGATGGACGGCGGTTCCTGCGCGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCCGCCCGGCAACAGACGCCCCGCAACACGGTATCGACGATTTTGCCTGAAGCTGATCGCAGTCTTTTTGAGG
CACTGCGTGCGAAGCGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTATGTGATTTTCCACGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCTGCGAAGGAAATGGCTGGGATCCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCAGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(218-322)

RQC domain (RQC)

(398-509)

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(530-595)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.752

99.003

0.374