Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FY138_RS05415 Genome accession   NZ_CP048543
Coordinates   1084815..1085537 (-) Length   240 a.a.
NCBI ID   WP_099085450.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain SJ001     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079815..1090537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY138_RS05405 (FY138_05365) - 1081285..1083717 (+) 2433 WP_099086124.1 ComEC/Rec2 family competence protein -
  FY138_RS05410 (FY138_05370) - 1083737..1084414 (-) 678 WP_003502589.1 glutathione S-transferase family protein -
  FY138_RS05415 (FY138_05375) dinR/lexA 1084815..1085537 (-) 723 WP_099085450.1 transcriptional repressor LexA Regulator
  FY138_RS05420 (FY138_05380) - 1086335..1087351 (+) 1017 WP_144030928.1 PilN domain-containing protein -
  FY138_RS05425 (FY138_05385) gspM 1087348..1087944 (+) 597 WP_099085448.1 type II secretion system protein GspM -
  FY138_RS05430 (FY138_05390) - 1087941..1088510 (+) 570 WP_099085447.1 hypothetical protein -
  FY138_RS05435 (FY138_05395) - 1088500..1089396 (+) 897 WP_111817215.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25974.90 Da        Isoelectric Point: 9.3311

>NTDB_id=369388 FY138_RS05415 WP_099085450.1 1084815..1085537(-) (dinR/lexA) [Agrobacterium tumefaciens strain SJ001]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKAKTPEAAPAPKTPANDLVGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=369388 FY138_RS05415 WP_099085450.1 1084815..1085537(-) (dinR/lexA) [Agrobacterium tumefaciens strain SJ001]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCATCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCCTCGAAATCTGGCATCCACCGCCTGATCACCGCCCTCGAAGAGCGCGGGTTTA
TTCGCCGGCTACCAAATAGAGCGCGAGCGCTGGAAGTCATCAAGCTGCCTGAGGCCTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCGTCATTGAAGGCAGCCTTGGCAAGGCCAAGACGCCGGAAGCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTCGTCGGGGCCGTTACCGTGCCGGTCATGGGCCGCATCGCTGCCGGTGTGCCGATTTCCGCCATCCAGA
ACAATACCCACGATGTGGCCGTGCCTGTTGATATGCTGGGTTCGGGCGAACATTACGCTCTTGAGGTCAAGGGCGACTCG
ATGATCGAGGCCGGCATTTTTGATGGCGATACCGTCATCATCCGCAATGGCAATACGGCGAATCCGGGTGATATCGTCGT
AGCGCTGGTGGATGATGAGGAAGCCACCCTGAAGCGTTTCCGTCGCAAGGGCGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAAACGCGTATTTTTGGACCGGACCGGGTGAAAATCCAGGGCAAGCTGGTAGGGCTGATCCGCCGTTACCAT
TGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-63)

Peptidase S24-like (Peptidase_S24)

(118-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363