Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FY140_RS23090 Genome accession   NZ_CP048537
Coordinates   2645751..2647559 (+) Length   602 a.a.
NCBI ID   WP_262534373.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain SJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2640751..2652559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY140_RS23090 (FY140_22930) recQ 2645751..2647559 (+) 1809 WP_262534373.1 DNA helicase RecQ Machinery gene
  FY140_RS23095 (FY140_22935) - 2647614..2648846 (-) 1233 WP_262534377.1 ROK family transcriptional regulator -
  FY140_RS23100 (FY140_22940) - 2649111..2650133 (+) 1023 WP_080818485.1 sugar ABC transporter substrate-binding protein -
  FY140_RS23105 (FY140_22945) - 2650373..2651455 (+) 1083 WP_003524280.1 ABC transporter permease -
  FY140_RS23110 (FY140_22950) - 2651455..2652237 (+) 783 WP_003524281.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67026.60 Da        Isoelectric Point: 6.2889

>NTDB_id=369333 FY140_RS23090 WP_262534373.1 2645751..2647559(+) (recQ) [Agrobacterium tumefaciens strain SJ003]
MTADPLHILKTVYGYDAFRGRQADIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADEPTRAEILGHLGIEEHDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKDRDAESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKATREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAVAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRAWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTASTVLPESDRGLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAAKPASAQEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=369333 FY140_RS23090 WP_262534373.1 2645751..2647559(+) (recQ) [Agrobacterium tumefaciens strain SJ003]
GTGACCGCTGATCCCTTGCATATCCTCAAGACCGTCTATGGCTACGATGCGTTTCGCGGAAGGCAGGCCGACATCATTCG
GCATGTAATGGCCGGAAACAATGCTTTCGTTCTGATGCCGACGGGCGGTGGAAAGTCGCTTTGTTACCAGATTCCGGCGC
TTGCGCGTGACGGCATGGGGTTGATCGTCTCTCCGCTCATCGCACTGATGGTCGATCAGGTCGCTGCCCTGCGTCAGGCC
GGCGTGCGGGCCGAAGCTCTCAATTCCGATCTTTCCCCGGAAGAGCGGCGCGCGCTTTGGCGGGATATGCGGGCCGGGAA
AGTCGATATTCTTTATGCCGCGCCGGAAACCCTGCTCAAGCCGGATGTTCTCGATGCGTTGCAATCCATCGATCTGTCGC
TGATCGCGGTCGATGAGGCCCATTGCCTGTCGCAATGGGGCCATGATTTCCGGCCGCCCTACCGCCAGTTAGACACGCTG
ATCGAGCGTTTTCCCGATACGCCGCGCATGGCGCTGACGGCGACGGCCGACGAGCCCACGCGCGCTGAAATTCTCGGTCA
TCTGGGGATTGAAGAGCACGATGCCTTCATTGCCGGGTTCGACCGGCCCAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCGCGCGCGCAGCTGAAGCGCTTTTTGAAGGATCGCGACGCTGAGAGCGGTATCGTCTATTGCCTTTCCAAACGCAAA
GTGGACGAAACGGCCGCATGGCTGCGGGAGGAGGGTCGCGATGCGCTGCCCTATCACGCTGGCATGGACAAGGCTACCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTCGGCATGGGCATAGACA
AGCCGGATGTGCGCTTCGTGGTTCATATCGACCTGCCTGGCAGCATCGAGGCCTATTATCAGGAAACGGGCCGAGCCGGT
CGCGACGGTCTGCCGTCGGACGTGCTCATGCTGTACGGCTATGAAGATATTGCCCTGCGCAATCGTTTCATCGAAGAGTC
TGATGCCGCGGACCAACGCAAATATATGGAGCGCCAGAAGCTCGATGCGCTGCTTGGCCTCGCAGAAACGGCGAGTTGCC
GCCGGCAGGTTCTGCTCTCCTATTTCGGCGACCGGTGTGAGCCCTGCGGCAATTGCGATACCTGCGCCGAGCCGCCGGAC
CTGTTTGATGGGGCCGTCGCCGCTCAGAAACTTCTGTCCTGTATTTATCGCACGGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGTGTCGAGGACGAGCGGATTTCCCGCTTCGGACATGATCGAATCACCACCTACGGGATAGGCA
AGGAGCATGACAACCGCGCATGGCGTGCCATCCTGCGTCAGCTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGA
CATGGCGGCCTGTCCATCTCCGAGGATGGACGGCGGTTCCTGCGCGAAAAACCGGCATTGATGCTGAGGATACCATCCGC
TCCCCGTTCTGCAAGGCAACAGACGCCCCGCAACACGGCATCGACGGTCTTGCCGGAATCCGATCGCGGTCTTTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGGGCACAGAACGTTCCCCCCTACGTGATTTTCCACGACAAGACCCTCATA
GAACTTGCGGCGGCAAAACCGGCCTCGGCGCAGGAAATGGCTGGGATTCCCGGCGTCGGAGATACCAAGCTCGAGCGATA
CGGACCTGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(529-595)

RQC domain (RQC)

(398-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.752

99.003

0.374