Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FY140_RS11095 Genome accession   NZ_CP048537
Coordinates   167563..167928 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain SJ003     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 162563..172928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY140_RS11080 (FY140_11015) - 164777..165154 (-) 378 WP_262535545.1 hypothetical protein -
  FY140_RS11085 (FY140_11020) - 165672..167267 (+) 1596 WP_262534783.1 globin-coupled sensor protein -
  FY140_RS11090 (FY140_11025) - 167267..167566 (+) 300 WP_262534784.1 STAS domain-containing protein -
  FY140_RS11095 (FY140_11030) scnR 167563..167928 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  FY140_RS11100 (FY140_11035) - 167945..170212 (+) 2268 WP_262534785.1 chemotaxis protein CheA -
  FY140_RS11105 (FY140_11040) cheR 170226..171134 (+) 909 WP_137002884.1 protein-glutamate O-methyltransferase CheR -
  FY140_RS11110 (FY140_11045) cheB 171131..172186 (+) 1056 WP_003522763.1 protein-glutamate O-methylesterase CheB -
  FY140_RS11115 (FY140_11050) cheY2 172186..172575 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=369305 FY140_RS11095 WP_003493773.1 167563..167928(+) (scnR) [Agrobacterium tumefaciens strain SJ003]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=369305 FY140_RS11095 WP_003493773.1 167563..167928(+) (scnR) [Agrobacterium tumefaciens strain SJ003]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAAACCATTCAGGCTGAAGACGGCATTGAGGGCCTCGAAGTGCTCGAGCAGAGCAACCCCGATGTTATCGTGACGGACA
TCAACATGCCCCGTCTCGACGGTTTCGGCTTCATCGAGGGCGTGCGGCGCAACGAGAAGTATCGGGCTATCCCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAAAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACGGGCTGGATCGTCAAGCCGTT
CGACCCTGCGAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364