Detailed information NTG0369260

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FJM75_RS16900
• Genome accession: NZ_CP041063
• Coordinates: 3318345..3320477 (+)
• Length: 710 a.a.
• NCBI ID: WP_165999786.1
• Uniprot ID: -
• Organism: Bacillus sp. Cs-700
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 3313345..3325477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJM75_RS16865	-	3313839..3314279 (+)	441	WP_160921031.1	hypothetical protein	-
FJM75_RS16870	-	3314451..3314837 (+)	387	WP_160921033.1	general stress protein	-
FJM75_RS16875	-	3314967..3315164 (-)	198	WP_098446507.1	DUF2188 domain-containing protein	-
FJM75_RS16880	-	3315548..3315907 (-)	360	WP_165999779.1	DUF4870 domain-containing protein	-
FJM75_RS16885	-	3316013..3316357 (-)	345	WP_165999782.1	hypothetical protein	-
FJM75_RS16890	mnmH	3316474..3317535 (+)	1062	WP_165999784.1	tRNA 2-selenouridine(34) synthase MnmH	-
FJM75_RS16895	-	3317498..3317962 (-)	465	WP_098446511.1	hypothetical protein	-
FJM75_RS16900	clpC	3318345..3320477 (+)	2133	WP_165999786.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
FJM75_RS16905	-	3320738..3322006 (+)	1269	WP_165999788.1	ATP-grasp domain-containing protein	-
FJM75_RS16910	-	3322039..3324009 (+)	1971	WP_165999790.1	hypothetical protein	-
FJM75_RS16915	-	3324131..3324427 (+)	297	WP_098446515.1	Dabb family protein	-
FJM75_RS16920	-	3324450..3325451 (+)	1002	WP_165999791.1	zinc-binding dehydrogenase	-

Sequence

Protein

• Length: 710 a.a.
• Molecular weight: 78970.44 Da
• Isoelectric Point: 4.9465

>NTDB_id=369260 FJM75_RS16900 WP_165999786.1 3318345..3320477(+) (clpC) [Bacillus sp. Cs-700]
MLCDQCQQNQASVQLNVQMNQHKKRVNLCSTCYANVMNGQTASSPKGQMDEFFQSFMGSAEQNGFTSQEDGPQTESGKGK
GGLLDNLGRNLSDAAKAGLIDPVIGRENEVARVIETLNRRNKNNPVLIGEAGVGKTAIAEGLALRISEGQVPSKLKNKEI
YLLDVASLVSNTGVRGQFEERMKQLISELQSRKNVILFIDELHQIVGAGSAEGSMDAGNILKPALARGELQLIGATTLKE
YRQIEKDAALERRFQPVMVNEPTVEEAIQILKGLQPKYEEYHEVNYTEEAIRACVSLSNRFIQDRFLPDKAIDLMDEAGA
KMNLTFAVSNHDEIQQRLHQIATEKNKAAEAEDYELAAKLRTEELQLEKQLEETLKNNSNANHSVDLEEIQQIVEGKTGI
PVRKLREDEQTKMKNLAERLNSKVIGQEDAVNKVAKAIRRSRAGLKRQNRPIGSFLFVGPTGVGKTELSRSLAEEMFGDR
EAMIRLDMSEYMEKHSVSKLIGSPPGYVGHEEAGQLTERVRRKPYSIILIDEVEKAHPDVQNMFLQILDDGRLTDSQGRT
VSFKDTVIIMTSNAGTSERRITVGFESAESYTGVMESLGGYFRPEFLNRFDGIIPFKSLEQSSLVTIVDLMINDLDESLE
EQSITLTISEAAKEKLAVLGYNPQFGARPLRRVIEEHVEDGIADLLVDEGSIKSVTVEVEEDKIVVSQKK

Nucleotide

• Length: 2133 bp

>NTDB_id=369260 FJM75_RS16900 WP_165999786.1 3318345..3320477(+) (clpC) [Bacillus sp. Cs-700]
ATGCTTTGTGATCAATGCCAACAAAACCAGGCTTCGGTTCAACTGAATGTCCAAATGAATCAACATAAGAAAAGAGTTAA
CCTTTGTAGCACGTGTTACGCAAATGTGATGAATGGTCAAACAGCTTCATCGCCAAAAGGTCAAATGGATGAGTTCTTTC
AATCCTTTATGGGTTCAGCAGAACAGAATGGTTTTACAAGTCAAGAAGATGGACCACAAACAGAATCAGGAAAAGGTAAA
GGCGGTTTACTTGATAACCTTGGTCGAAATTTATCTGACGCAGCAAAAGCTGGTTTGATTGATCCAGTCATCGGGCGCGA
AAATGAGGTAGCAAGAGTGATTGAAACATTAAACCGTCGTAACAAAAATAATCCAGTTTTAATCGGTGAAGCAGGAGTCG
GTAAAACGGCGATTGCAGAAGGTCTTGCTTTAAGGATTTCGGAAGGTCAAGTTCCTTCTAAACTAAAGAATAAAGAAATT
TATTTATTGGATGTTGCGTCACTTGTTTCAAATACGGGTGTAAGAGGACAATTTGAAGAAAGAATGAAACAACTAATTTC
TGAACTTCAAAGTCGGAAAAATGTGATCTTATTTATAGATGAACTTCATCAAATCGTTGGAGCTGGATCTGCAGAAGGAT
CAATGGATGCAGGAAACATATTAAAACCAGCACTTGCGAGAGGCGAGCTTCAATTAATTGGTGCCACAACGCTTAAAGAG
TATCGTCAAATCGAAAAAGATGCCGCATTAGAACGACGTTTTCAACCAGTAATGGTCAATGAACCTACTGTAGAAGAAGC
CATTCAGATTCTAAAAGGTTTGCAACCTAAGTATGAAGAGTACCATGAAGTGAACTATACGGAAGAAGCGATTCGTGCTT
GTGTATCATTATCGAACCGGTTCATTCAAGATCGTTTCTTACCAGATAAAGCAATTGACTTAATGGATGAAGCAGGCGCC
AAAATGAACTTAACGTTTGCTGTGTCGAACCATGATGAAATTCAGCAGCGTTTACACCAGATTGCTACTGAAAAAAACAA
GGCAGCAGAGGCTGAAGATTATGAACTAGCTGCCAAACTAAGAACAGAAGAATTGCAGCTTGAGAAACAGCTTGAAGAAA
CGTTAAAAAACAACTCGAATGCAAATCATTCAGTTGATCTTGAAGAGATCCAGCAGATTGTCGAAGGAAAAACAGGAATT
CCAGTTCGTAAGCTTAGGGAAGATGAGCAGACGAAAATGAAAAACCTTGCAGAGCGACTGAATTCTAAAGTAATTGGTCA
GGAAGATGCGGTTAACAAAGTAGCAAAAGCCATCCGCAGAAGTCGAGCAGGATTGAAACGGCAAAATCGACCGATTGGTT
CTTTCCTATTCGTCGGTCCAACTGGTGTCGGAAAAACGGAACTTTCCCGTTCTCTTGCAGAAGAAATGTTCGGTGATCGA
GAAGCAATGATTCGACTTGATATGAGTGAATATATGGAAAAGCACTCTGTCTCTAAACTGATCGGTTCTCCTCCAGGCTA
TGTTGGTCATGAGGAAGCAGGACAATTAACAGAAAGAGTACGCCGTAAACCATATAGCATCATTTTAATTGATGAAGTGG
AGAAAGCTCATCCTGATGTACAAAATATGTTCCTTCAAATCCTTGATGATGGACGTCTTACAGATAGTCAAGGTAGGACG
GTAAGCTTTAAAGACACGGTTATTATCATGACAAGTAATGCCGGAACTTCTGAGAGAAGAATTACTGTTGGTTTTGAATC
AGCAGAAAGCTATACTGGGGTGATGGAGAGCCTTGGTGGTTACTTTAGGCCTGAATTCTTAAATCGGTTTGATGGAATTA
TTCCATTTAAGTCACTTGAACAATCAAGTCTCGTTACCATTGTAGACCTTATGATTAATGATTTAGATGAAAGCCTTGAA
GAACAGAGTATTACACTTACAATTAGTGAAGCAGCAAAAGAGAAGTTGGCTGTACTTGGATATAATCCACAGTTTGGTGC
CCGTCCTCTTCGCAGAGTAATTGAAGAACATGTGGAAGATGGTATTGCTGATTTGCTTGTCGATGAAGGCAGTATCAAAT
CCGTGACGGTTGAAGTTGAAGAAGATAAGATTGTTGTTTCACAAAAAAAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (126-257)

• AAA domain (Cdc48 subfamily) (AAA_2) (450-611)

• AAA lid domain (AAA_lid_9) (263-362)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (619-694)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.081	100	0.585
clpE	Streptococcus mutans UA159	54.791	100	0.572
clpE	Streptococcus pneumoniae Rx1	54.795	100	0.563
clpE	Streptococcus pneumoniae D39	54.795	100	0.563
clpE	Streptococcus pneumoniae R6	54.795	100	0.563
clpE	Streptococcus pneumoniae TIGR4	54.321	100	0.558
clpC	Bacillus subtilis subsp. subtilis str. 168	54.517	90.423	0.493
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.377	91.268	0.432
clpC	Streptococcus thermophilus LMD-9	45.984	89.437	0.411
clpC	Streptococcus thermophilus LMG 18311	45.827	89.437	0.41
clpC	Streptococcus mutans UA159	46.926	87.042	0.408
clpC	Streptococcus pneumoniae TIGR4	44.462	91.549	0.407
clpC	Streptococcus pneumoniae Rx1	45.141	89.859	0.406
clpC	Streptococcus pneumoniae D39	45.141	89.859	0.406