Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FJM75_RS13625 Genome accession   NZ_CP041063
Coordinates   2722340..2722618 (-) Length   92 a.a.
NCBI ID   WP_098445902.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717340..2727618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS13590 - 2717822..2718151 (+) 330 WP_098445895.1 cyclic-di-AMP receptor -
  FJM75_RS13595 holB 2718174..2719160 (+) 987 WP_098445896.1 DNA polymerase III subunit delta' -
  FJM75_RS13600 - 2719165..2719992 (+) 828 WP_098445897.1 stage 0 sporulation family protein -
  FJM75_RS13605 yabA 2720009..2720353 (+) 345 WP_098445898.1 DNA replication initiation control protein YabA -
  FJM75_RS13610 - 2720436..2721173 (+) 738 WP_165999065.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FJM75_RS13615 - 2721160..2721462 (+) 303 WP_160921651.1 GIY-YIG nuclease family protein -
  FJM75_RS13620 rsmI 2721422..2722288 (+) 867 WP_165999067.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FJM75_RS13625 abrB 2722340..2722618 (-) 279 WP_098445902.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FJM75_RS13630 metG 2723138..2725078 (+) 1941 WP_165999069.1 methionine--tRNA ligase -
  FJM75_RS13635 - 2725358..2726128 (+) 771 WP_165999071.1 TatD family hydrolase -
  FJM75_RS13640 - 2726290..2727579 (+) 1290 WP_165999073.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10222.93 Da        Isoelectric Point: 5.2185

>NTDB_id=369253 FJM75_RS13625 WP_098445902.1 2722340..2722618(-) (abrB) [Bacillus sp. Cs-700]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDDNLAIGNGKLILSKEGAE
QVLEEIQKALAK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=369253 FJM75_RS13625 WP_098445902.1 2722340..2722618(-) (abrB) [Bacillus sp. Cs-700]
ATGAAATCTACTGGTATTGTACGTAAAGTTGACGAGCTTGGCCGTGTTGTTATTCCGATCGAATTACGCCGTACACTTGG
TATCGCAGAAAAGGATGCTCTTGAAATCTATGTTGACGACGAGCGCATCATCCTAAAGAAATATAAGCCTAACATGACTT
GTCAGGTAACTGGCGAAGTATCCGATGACAACCTTGCAATCGGTAATGGCAAGCTTATTCTTAGCAAAGAAGGCGCAGAG
CAAGTATTAGAAGAAATTCAAAAAGCTCTTGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

87.778

97.826

0.859

Multiple sequence alignment