Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FJM75_RS13395 Genome accession   NZ_CP041063
Coordinates   2674769..2675887 (+) Length   372 a.a.
NCBI ID   WP_098445630.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2669769..2680887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS13365 yidD 2670146..2670367 (-) 222 WP_098445624.1 membrane protein insertion efficiency factor YidD -
  FJM75_RS13370 rnpA 2670364..2670738 (-) 375 WP_142329598.1 ribonuclease P protein component -
  FJM75_RS13375 rpmH 2670816..2670950 (-) 135 WP_048311109.1 50S ribosomal protein L34 -
  FJM75_RS13380 dnaA 2671662..2673014 (+) 1353 WP_098445627.1 chromosomal replication initiator protein DnaA -
  FJM75_RS13385 dnaN 2673211..2674353 (+) 1143 WP_165999021.1 DNA polymerase III subunit beta -
  FJM75_RS13390 yaaA 2674542..2674754 (+) 213 WP_165999024.1 S4 domain-containing protein YaaA -
  FJM75_RS13395 recF 2674769..2675887 (+) 1119 WP_098445630.1 DNA replication/repair protein RecF Machinery gene
  FJM75_RS13400 - 2675897..2676175 (+) 279 WP_098445631.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  FJM75_RS13405 gyrB 2676245..2678173 (+) 1929 WP_159780742.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FJM75_RS13410 gyrA 2678306..2680864 (+) 2559 WP_165999025.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43004.29 Da        Isoelectric Point: 7.6839

>NTDB_id=369251 FJM75_RS13395 WP_098445630.1 2674769..2675887(+) (recF) [Bacillus sp. Cs-700]
MHLNTLKVTNYRNYHKQELQFENNVNVFLGENAQGKTNIMEAIYVLAMARSHRTPRDKELINWDEEYAKIEGRIEKRNGP
LSLQLVISQKGKKAKLNQLEQQKLSNYIGAMNVVMFAPEDLNLVKGNPGVRRRFIDIEIGQVQPVYLYHLGRYLKLLQQR
NSLLKTMRYQKKPDYVMLDILTEQLIEAAANIYLRRVRFVQLLQQWAEPIHYGISRGLEKLEIHYNPTVEVSEPTDLSKI
VDGYKEKFDKIKEREVERGVTLAGPHRDDLSFFVNGKDVQTYGSQGQQRTTALSLKLAEIELIHSEVGEYPLLLLDDVLS
ELDDFRQSHLLNTIQGKVQTFVTTTSVEGIHHETLEKATTFQVQEGLIEKVK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=369251 FJM75_RS13395 WP_098445630.1 2674769..2675887(+) (recF) [Bacillus sp. Cs-700]
TTGCATCTAAACACATTAAAAGTAACGAATTATCGTAATTATCATAAACAAGAACTTCAGTTCGAAAATAACGTAAATGT
TTTTCTCGGCGAGAATGCGCAAGGAAAAACAAATATCATGGAAGCCATCTATGTCCTTGCTATGGCAAGGTCCCATCGTA
CACCAAGAGATAAAGAATTAATCAATTGGGACGAGGAATATGCTAAAATAGAAGGTAGAATTGAAAAACGAAATGGTCCC
CTCTCCCTCCAACTGGTTATTTCCCAAAAAGGTAAAAAAGCCAAGCTAAATCAATTGGAACAGCAGAAGCTTAGCAACTA
TATTGGTGCCATGAATGTTGTCATGTTTGCACCAGAGGATCTCAATCTGGTTAAAGGTAATCCTGGCGTGCGCAGAAGGT
TTATTGATATTGAGATTGGCCAGGTTCAACCCGTTTATCTTTATCATCTGGGACGATACCTTAAACTTCTTCAGCAGCGA
AACAGCTTATTGAAGACGATGCGATATCAAAAGAAGCCTGATTATGTCATGCTTGATATTTTGACCGAACAATTAATAGA
AGCAGCTGCGAATATCTATTTACGACGAGTACGATTCGTTCAACTCCTGCAACAATGGGCTGAACCAATTCATTATGGGA
TTAGTAGAGGACTAGAAAAACTCGAAATCCATTATAATCCGACGGTTGAGGTATCAGAACCAACGGATTTGTCGAAAATA
GTAGATGGATATAAGGAAAAGTTTGATAAAATTAAAGAGAGAGAAGTTGAGCGTGGCGTCACGCTCGCGGGACCGCACCG
AGATGATTTGTCGTTTTTTGTAAATGGAAAGGACGTTCAAACGTATGGATCCCAGGGACAACAGCGAACAACTGCTTTAT
CCCTGAAACTCGCTGAAATTGAATTAATTCATAGTGAAGTAGGCGAATATCCTTTACTTCTACTCGATGACGTACTGTCA
GAGTTAGATGACTTTAGACAGTCTCATCTTTTAAATACGATTCAAGGAAAAGTTCAAACGTTTGTGACCACAACGAGCGT
TGAAGGCATCCATCATGAAACGCTTGAAAAAGCGACGACTTTTCAAGTTCAAGAAGGACTAATCGAAAAGGTGAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.027

99.462

0.667

Multiple sequence alignment