Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FJM75_RS10125 Genome accession   NZ_CP041063
Coordinates   1981549..1982253 (-) Length   234 a.a.
NCBI ID   WP_159785070.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1976549..1987253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS10100 cspD 1976822..1977022 (-) 201 WP_098445063.1 cold-shock protein CspD -
  FJM75_RS10105 - 1977163..1977885 (-) 723 WP_165997985.1 ComF family protein -
  FJM75_RS10110 - 1977873..1979414 (-) 1542 WP_242688798.1 DEAD/DEAH box helicase -
  FJM75_RS10115 - 1979389..1980237 (-) 849 WP_165997987.1 DegV family protein -
  FJM75_RS10120 - 1980547..1981476 (+) 930 WP_165997989.1 peptidoglycan-binding protein -
  FJM75_RS10125 degU 1981549..1982253 (-) 705 WP_159785070.1 response regulator transcription factor Regulator
  FJM75_RS10130 - 1982257..1983408 (-) 1152 WP_165997991.1 sensor histidine kinase -
  FJM75_RS10135 - 1983680..1984318 (+) 639 WP_165997992.1 YigZ family protein -
  FJM75_RS10140 - 1984512..1985579 (+) 1068 WP_165997994.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26514.40 Da        Isoelectric Point: 6.5048

>NTDB_id=369243 FJM75_RS10125 WP_159785070.1 1981549..1982253(-) (degU) [Bacillus sp. Cs-700]
MYAAKTKTKIIIIDDHRLFREGVKRILDMEDDFEVIAEGDDGDEALRLVEENKPDVVLMDINMPHVNGVEATRQLIEQVP
ETKVIILSIHDDETYVTHAVKTGAAGYLLKEMDANSLVEAVKVVASGGAYIHPKVTHNLVNEYRRLATEGKRPSTQIGYK
EVEYRKPLHILTRRECEVLQLLTDGKSNRSIGEDLYISEKTVKNHVSNILQKMNVNDRTQAVVEAIKKGWVKVR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=369243 FJM75_RS10125 WP_159785070.1 1981549..1982253(-) (degU) [Bacillus sp. Cs-700]
ATGTATGCAGCAAAGACCAAAACTAAAATTATTATTATAGATGACCATCGCTTGTTCCGCGAAGGTGTTAAGCGTATTTT
GGATATGGAAGATGATTTCGAAGTGATTGCTGAAGGTGATGATGGAGACGAAGCGCTTCGTCTTGTTGAAGAAAATAAGC
CTGATGTTGTTTTAATGGATATTAATATGCCACATGTAAATGGCGTTGAAGCTACGAGGCAGCTGATCGAACAAGTGCCT
GAGACTAAGGTGATTATTTTATCGATTCATGATGACGAAACGTACGTAACCCACGCGGTAAAGACCGGTGCTGCCGGTTA
TCTATTAAAAGAGATGGATGCAAATTCGTTAGTTGAAGCCGTTAAAGTTGTCGCTTCTGGAGGAGCTTACATTCATCCAA
AAGTGACGCATAATCTTGTGAATGAATACCGTCGACTCGCTACGGAAGGAAAAAGACCATCTACACAAATTGGTTATAAG
GAAGTGGAATACCGCAAACCGCTACACATTTTGACACGACGAGAATGTGAAGTGCTCCAGTTACTTACAGATGGAAAAAG
CAATCGCTCGATCGGTGAAGATCTTTACATTAGTGAGAAAACAGTAAAAAACCACGTATCGAATATTTTGCAGAAAATGA
ACGTAAATGACCGAACGCAAGCTGTCGTAGAGGCAATCAAAAAAGGCTGGGTAAAGGTGCGCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(170-225)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

76.623

98.718

0.756

Multiple sequence alignment