Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FJM75_RS06135 Genome accession   NZ_CP041063
Coordinates   1187438..1188187 (-) Length   249 a.a.
NCBI ID   WP_098444284.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1182438..1193187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS06115 dnaG 1183222..1185042 (-) 1821 WP_165996770.1 DNA primase -
  FJM75_RS06120 - 1185062..1185553 (-) 492 WP_165996771.1 DUF188 domain-containing protein -
  FJM75_RS06125 - 1185809..1186633 (-) 825 WP_165996772.1 pyruvate, water dikinase regulatory protein -
  FJM75_RS06130 - 1186648..1187289 (-) 642 WP_098444283.1 helix-turn-helix transcriptional regulator -
  FJM75_RS06135 recO 1187438..1188187 (-) 750 WP_098444284.1 DNA repair protein RecO Machinery gene
  FJM75_RS06140 - 1188227..1188364 (-) 138 WP_159783265.1 YqzL family protein -
  FJM75_RS06145 era 1188465..1189373 (-) 909 WP_165996775.1 GTPase Era -
  FJM75_RS06150 - 1189366..1189764 (-) 399 WP_159783267.1 cytidine deaminase -
  FJM75_RS06155 - 1189777..1190166 (-) 390 WP_165996777.1 diacylglycerol kinase family protein -
  FJM75_RS06160 ybeY 1190150..1190623 (-) 474 WP_165996778.1 rRNA maturation RNase YbeY -
  FJM75_RS06165 - 1190620..1192746 (-) 2127 WP_165996780.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28507.18 Da        Isoelectric Point: 9.1521

>NTDB_id=369232 FJM75_RS06135 WP_098444284.1 1187438..1188187(-) (recO) [Bacillus sp. Cs-700]
MLKKVEGIVIRTVDYGETNKILTIYSRETGKVGVMARGAKKPKSRLSAVSQLFVYGQYLYQHTSGLGGLNQGEIIDSFRS
IRNDLFLTSYAAYAAELVDKLTEERKPNPYLFEMLYQVLHALNEEKDPEVILFIFELKMLRVAGITPQLDRCANCGLSEG
KFHFSINEGGLLCHRCLSVDPYNIPIMKRTAELLHLFAHIDLGRLGNISLKKETKKEIRQILNLYFDAYSGLYLKSKRFL
DQLDRFKLE

Nucleotide


Download         Length: 750 bp        

>NTDB_id=369232 FJM75_RS06135 WP_098444284.1 1187438..1188187(-) (recO) [Bacillus sp. Cs-700]
TTGTTAAAAAAGGTTGAAGGAATTGTGATTCGAACCGTGGACTATGGTGAAACAAATAAAATACTGACGATTTATTCTAG
AGAGACGGGTAAGGTTGGCGTCATGGCAAGAGGCGCAAAAAAACCTAAAAGCCGTCTTTCTGCTGTTTCGCAACTTTTTG
TCTATGGACAGTACCTTTATCAGCATACATCGGGTCTTGGGGGATTGAATCAGGGAGAAATAATTGATTCTTTTCGCTCC
ATAAGAAATGATTTGTTTCTCACTTCCTATGCGGCATATGCAGCAGAGTTAGTTGATAAATTAACAGAAGAGAGAAAACC
CAATCCCTATTTATTTGAAATGCTTTATCAGGTTCTTCATGCGTTAAATGAGGAAAAAGACCCTGAAGTTATTTTATTTA
TTTTTGAGCTTAAAATGCTTCGCGTTGCGGGAATTACACCACAACTAGATCGATGTGCAAACTGTGGTCTTTCTGAAGGG
AAGTTTCATTTCTCTATTAATGAAGGTGGGTTACTATGTCATCGGTGTCTTTCAGTGGATCCATATAACATTCCGATCAT
GAAACGGACGGCAGAACTTCTTCATTTATTTGCACACATTGATTTGGGAAGATTGGGAAATATTTCACTAAAAAAAGAAA
CGAAAAAAGAAATTAGACAAATTCTTAACCTTTATTTTGATGCTTATTCCGGCCTTTATTTAAAATCAAAACGTTTTTTG
GATCAGTTGGACCGGTTTAAACTTGAGTAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

63.158

99.197

0.627

Multiple sequence alignment