Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FJM75_RS04185 Genome accession   NZ_CP041063
Coordinates   824670..825272 (+) Length   200 a.a.
NCBI ID   WP_165996251.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819670..830272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS04155 - 821151..821354 (+) 204 WP_098443926.1 alpha/beta-type small acid-soluble spore protein -
  FJM75_RS04160 - 821405..821911 (-) 507 WP_165996242.1 hypothetical protein -
  FJM75_RS04165 - 821965..822216 (-) 252 WP_098443928.1 DNA alkylation repair protein -
  FJM75_RS04170 - 822318..822680 (-) 363 WP_165996244.1 DUF1798 family protein -
  FJM75_RS04175 - 822787..823284 (-) 498 WP_165996246.1 MerR family transcriptional regulator -
  FJM75_RS04180 - 823612..824571 (-) 960 WP_242688633.1 DUF2515 family protein -
  FJM75_RS04185 recU 824670..825272 (+) 603 WP_165996251.1 Holliday junction resolvase RecU Machinery gene
  FJM75_RS04190 - 825354..828056 (+) 2703 WP_165996253.1 PBP1A family penicillin-binding protein -
  FJM75_RS04195 nth 828137..828796 (-) 660 WP_165996254.1 endonuclease III -
  FJM75_RS04200 - 828887..829603 (-) 717 WP_165996257.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23196.38 Da        Isoelectric Point: 9.5577

>NTDB_id=369229 FJM75_RS04185 WP_165996251.1 824670..825272(+) (recU) [Bacillus sp. Cs-700]
MPIRYPNGKPYVPSAQNQLSSQKQKSYSNRGMTLEEDINQSNTYYLSTGKAVIHKKPTPVQIVNVDYPKRSAAVIKEAYF
KQASTTDYNGVYKGKYIDFEAKETKNKTSFPLNNFHEHQISHMKQVHDHDGICFVLLRFSITDEVFLLDAVALFSHWQSM
KDGGRKSIKKEEIEKEGTHIPYTFQPRIDYLKIIDKMYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=369229 FJM75_RS04185 WP_165996251.1 824670..825272(+) (recU) [Bacillus sp. Cs-700]
GTGCCGATTCGATATCCGAACGGAAAGCCGTACGTCCCTTCGGCTCAGAATCAGCTGTCAAGTCAAAAACAAAAGTCATA
TAGCAATCGAGGTATGACACTAGAAGAGGATATTAATCAGAGTAATACGTATTATCTCTCAACAGGTAAAGCCGTTATTC
ACAAAAAGCCTACGCCAGTACAAATTGTTAATGTTGATTATCCGAAACGGAGTGCGGCTGTTATTAAAGAAGCTTACTTC
AAACAGGCTTCGACTACCGATTATAATGGAGTCTATAAAGGAAAATACATCGATTTTGAAGCCAAAGAAACGAAGAACAA
GACGTCCTTTCCATTAAATAATTTTCATGAACATCAGATCAGTCATATGAAGCAAGTACATGATCATGATGGAATTTGCT
TTGTCCTTCTCCGCTTTTCAATAACCGATGAGGTTTTTTTACTTGACGCAGTTGCTCTCTTTTCTCATTGGCAATCAATG
AAAGACGGCGGCAGGAAATCAATTAAAAAAGAAGAGATTGAAAAAGAAGGCACACATATCCCATATACCTTTCAACCACG
CATTGACTATCTGAAAATTATTGATAAAATGTATTTCAGCTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.5

100

0.645

Multiple sequence alignment