Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FY143_RS05040 Genome accession   NZ_CP048522
Coordinates   1023136..1023858 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sta004     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018136..1028858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY143_RS05030 (FY143_04990) - 1019561..1021996 (+) 2436 WP_111789253.1 ComEC/Rec2 family competence protein -
  FY143_RS05035 (FY143_04995) - 1022013..1022696 (-) 684 WP_019565539.1 glutathione S-transferase family protein -
  FY143_RS05040 (FY143_05000) dinR/lexA 1023136..1023858 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  FY143_RS05045 (FY143_05005) - 1024070..1024951 (+) 882 WP_111789252.1 VOC family protein -
  FY143_RS05050 (FY143_05010) kdsA 1024951..1025796 (+) 846 WP_111789251.1 3-deoxy-8-phosphooctulonate synthase -
  FY143_RS05055 (FY143_05015) eno 1025944..1027218 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  FY143_RS05060 (FY143_05020) - 1027555..1027872 (+) 318 WP_003512872.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=369202 FY143_RS05040 WP_003512859.1 1023136..1023858(-) (dinR/lexA) [Agrobacterium tumefaciens strain Sta004]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=369202 FY143_RS05040 WP_003512859.1 1023136..1023858(-) (dinR/lexA) [Agrobacterium tumefaciens strain Sta004]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCAAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCAGAGGCTTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAGCCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCAGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAAGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGAGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATCTTCGGGCCCGACCGGGTAAAAATTCAGGGCAAGCTGGTTGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363