Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FY143_RS00760 Genome accession   NZ_CP048522
Coordinates   158677..159042 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain Sta004     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 153677..164042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY143_RS00745 (FY143_00750) - 155892..156269 (-) 378 WP_333717908.1 hypothetical protein -
  FY143_RS00750 (FY143_00755) - 156786..158381 (+) 1596 WP_333717859.1 globin-coupled sensor protein -
  FY143_RS00755 (FY143_00760) - 158381..158680 (+) 300 WP_013635450.1 STAS domain-containing protein -
  FY143_RS00760 (FY143_00765) scnR 158677..159042 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  FY143_RS00765 (FY143_00770) - 159059..161326 (+) 2268 WP_111790161.1 chemotaxis protein CheA -
  FY143_RS00770 (FY143_00775) cheR 161340..162248 (+) 909 WP_111790162.1 protein-glutamate O-methyltransferase CheR -
  FY143_RS00775 (FY143_00780) cheB 162245..163300 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  FY143_RS00780 (FY143_00785) cheY2 163300..163689 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=369192 FY143_RS00760 WP_003493773.1 158677..159042(+) (scnR) [Agrobacterium tumefaciens strain Sta004]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=369192 FY143_RS00760 WP_003493773.1 158677..159042(+) (scnR) [Agrobacterium tumefaciens strain Sta004]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGTATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTTATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364