Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E6P06_RS12085 Genome accession   NZ_CP041051
Coordinates   1820541..1821155 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter sp. CF971     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815541..1826155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P06_RS12065 (E6P06_12065) - 1815922..1817682 (-) 1761 WP_003035878.1 Lon protease family protein -
  E6P06_RS12070 (E6P06_12070) matP 1817868..1818320 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  E6P06_RS12075 (E6P06_12075) ompA 1818410..1819456 (-) 1047 WP_003035883.1 porin OmpA -
  E6P06_RS12080 (E6P06_12080) sulA 1819814..1820323 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  E6P06_RS12085 (E6P06_12085) sxy/tfoX 1820541..1821155 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  E6P06_RS12090 (E6P06_12090) yccS 1821133..1823286 (-) 2154 WP_139935273.1 YccS family putative transporter -
  E6P06_RS12095 (E6P06_12095) - 1823305..1823751 (-) 447 WP_003035892.1 YccF domain-containing protein -
  E6P06_RS12100 (E6P06_12100) helD 1823877..1825931 (+) 2055 WP_139935274.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=369179 E6P06_RS12085 WP_003035889.1 1820541..1821155(+) (sxy/tfoX) [Citrobacter sp. CF971]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=369179 E6P06_RS12085 WP_003035889.1 1820541..1821155(+) (sxy/tfoX) [Citrobacter sp. CF971]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment