Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BMQ_RS19835 Genome accession   NC_014019
Coordinates   3962832..3964073 (-) Length   413 a.a.
NCBI ID   WP_013058805.1    Uniprot ID   D5DQ31
Organism   Priestia megaterium QM B1551     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3957832..3969073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMQ_RS19815 (BMQ_4116) spoVS 3958392..3958652 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  BMQ_RS19820 (BMQ_4117) - 3958876..3959673 (-) 798 WP_013058802.1 TIGR00282 family metallophosphoesterase -
  BMQ_RS19825 (BMQ_4118) rny 3959755..3961314 (-) 1560 WP_013058803.1 ribonuclease Y -
  BMQ_RS19830 (BMQ_4119) recA 3961595..3962632 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  BMQ_RS19835 (BMQ_4120) cinA 3962832..3964073 (-) 1242 WP_013058805.1 competence/damage-inducible protein A Machinery gene
  BMQ_RS19840 (BMQ_4121) pgsA 3964090..3964674 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BMQ_RS19845 (BMQ_4122) - 3964819..3965781 (-) 963 WP_013058807.1 helix-turn-helix domain-containing protein -
  BMQ_RS19850 (BMQ_4123) - 3965794..3966585 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  BMQ_RS19855 (BMQ_4124) - 3966799..3967059 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  BMQ_RS19860 (BMQ_4125) ymfI 3967125..3967850 (-) 726 WP_013058810.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44859.97 Da        Isoelectric Point: 4.9071

>NTDB_id=36908 BMQ_RS19835 WP_013058805.1 3962832..3964073(-) (cinA) [Priestia megaterium QM B1551]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHANAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGICSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=36908 BMQ_RS19835 WP_013058805.1 3962832..3964073(-) (cinA) [Priestia megaterium QM B1551]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGTGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTAATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGGCCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTTGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5DQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.467
  cinA Streptococcus mitis SK321

45.952

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.462
  cinA Streptococcus pneumoniae R6

45.476

100

0.462
  cinA Streptococcus pneumoniae D39

45.238

100

0.46
  cinA Streptococcus mutans UA159

46.825

91.525

0.429
  cinA Streptococcus suis isolate S10

39.418

91.525

0.361

Multiple sequence alignment