Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FIM01_RS18680 Genome accession   NZ_CP041035
Coordinates   3795919..3796245 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 11W359501     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3790919..3801245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM01_RS18660 (FIM01_18660) - 3791019..3791648 (-) 630 WP_000219967.1 FHA domain-containing protein -
  FIM01_RS18665 (FIM01_18665) gspD 3791689..3793965 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  FIM01_RS18670 (FIM01_18670) - 3794007..3794843 (-) 837 WP_000870031.1 type II secretion system protein N -
  FIM01_RS18675 (FIM01_18675) gspN 3794843..3795586 (-) 744 WP_000730342.1 type II secretion system protein N -
  FIM01_RS18680 (FIM01_18680) hns 3795919..3796245 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  FIM01_RS18685 (FIM01_18685) - 3796440..3796880 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  FIM01_RS18690 (FIM01_18690) - 3796888..3798081 (-) 1194 WP_188139182.1 heme biosynthesis protein HemY -
  FIM01_RS18695 (FIM01_18695) - 3798091..3798930 (-) 840 WP_001230201.1 hypothetical protein -
  FIM01_RS18700 (FIM01_18700) - 3798939..3799706 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  FIM01_RS18705 (FIM01_18705) hemC 3799711..3800628 (-) 918 WP_031944408.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=369066 FIM01_RS18680 WP_000801427.1 3795919..3796245(-) (hns) [Acinetobacter baumannii strain 11W359501]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=369066 FIM01_RS18680 WP_000801427.1 3795919..3796245(-) (hns) [Acinetobacter baumannii strain 11W359501]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment