Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FIM01_RS02500 Genome accession   NZ_CP041035
Coordinates   514685..515569 (+) Length   294 a.a.
NCBI ID   WP_059247092.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11W359501     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509685..520569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM01_RS02475 (FIM01_02475) - 510084..511331 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  FIM01_RS02480 (FIM01_02480) wrbA 511619..512212 (+) 594 WP_001183353.1 NAD(P)H:quinone oxidoreductase -
  FIM01_RS02485 (FIM01_02485) - 512265..512840 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  FIM01_RS02490 (FIM01_02490) - 512913..513626 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  FIM01_RS02495 (FIM01_02495) - 513783..514454 (-) 672 WP_001193960.1 hypothetical protein -
  FIM01_RS02500 (FIM01_02500) tonB2 514685..515569 (+) 885 WP_059247092.1 energy transducer TonB Machinery gene
  FIM01_RS02505 (FIM01_02505) ybeY 515659..516135 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  FIM01_RS02510 (FIM01_02510) - 516145..517233 (-) 1089 WP_000122983.1 PhoH family protein -
  FIM01_RS02515 (FIM01_02515) miaB 517271..518722 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33659.55 Da        Isoelectric Point: 8.3773

>NTDB_id=369043 FIM01_RS02500 WP_059247092.1 514685..515569(+) (tonB2) [Acinetobacter baumannii strain 11W359501]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPVPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=369043 FIM01_RS02500 WP_059247092.1 514685..515569(+) (tonB2) [Acinetobacter baumannii strain 11W359501]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGTGCCGTCAGAACAATCGACTAAAGAAATCG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99

Multiple sequence alignment