Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FIM01_RS01655 Genome accession   NZ_CP041035
Coordinates   351599..352240 (+) Length   213 a.a.
NCBI ID   WP_139893747.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 11W359501     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346599..357240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM01_RS01635 (FIM01_01635) - 346647..346979 (+) 333 WP_000169598.1 hypothetical protein -
  FIM01_RS01640 (FIM01_01640) - 346982..347806 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  FIM01_RS01645 (FIM01_01645) ponA 347824..350379 (-) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  FIM01_RS01650 (FIM01_01650) pilM 350541..351599 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FIM01_RS01655 (FIM01_01655) pilN 351599..352240 (+) 642 WP_139893747.1 PilN domain-containing protein Machinery gene
  FIM01_RS01660 (FIM01_01660) pilO 352237..352977 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FIM01_RS01665 (FIM01_01665) pilP 352988..353515 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  FIM01_RS01670 (FIM01_01670) pilQ 353578..355743 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  FIM01_RS01675 (FIM01_01675) aroK 355755..356324 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24005.37 Da        Isoelectric Point: 5.8601

>NTDB_id=369030 FIM01_RS01655 WP_139893747.1 351599..352240(+) (pilN) [Acinetobacter baumannii strain 11W359501]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDGQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=369030 FIM01_RS01655 WP_139893747.1 351599..352240(+) (pilN) [Acinetobacter baumannii strain 11W359501]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGGTCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

71.564

99.061

0.709

Multiple sequence alignment