Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FY148_RS05650 Genome accession   NZ_CP048497
Coordinates   1139913..1142834 (+) Length   973 a.a.
NCBI ID   WP_262513387.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Teh002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134913..1147834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY148_RS05630 (FY148_05600) - 1136819..1137448 (+) 630 WP_003502754.1 MarC family protein -
  FY148_RS05635 (FY148_05605) - 1137564..1138712 (+) 1149 WP_099085417.1 HPP family protein -
  FY148_RS05640 (FY148_05610) - 1138767..1139030 (-) 264 WP_223564850.1 hypothetical protein -
  FY148_RS05645 (FY148_05615) ssb 1139064..1139648 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  FY148_RS05650 (FY148_05620) uvrA 1139913..1142834 (+) 2922 WP_262513387.1 excinuclease ABC subunit UvrA Machinery gene
  FY148_RS05655 (FY148_05625) - 1142891..1143691 (+) 801 WP_262513388.1 DUF72 domain-containing protein -
  FY148_RS05660 (FY148_05630) dusA 1143698..1144708 (-) 1011 WP_262513389.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FY148_RS05665 (FY148_05635) - 1144847..1145536 (+) 690 WP_262513390.1 fumarylacetoacetate hydrolase family protein -
  FY148_RS05670 (FY148_05640) - 1145572..1146105 (+) 534 WP_060725819.1 gamma carbonic anhydrase family protein -
  FY148_RS05675 (FY148_05645) zur 1146142..1146555 (-) 414 WP_003502775.1 zinc uptake transcriptional repressor Zur -
  FY148_RS05680 (FY148_05650) znuB 1146552..1147370 (-) 819 WP_003502777.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 106991.94 Da        Isoelectric Point: 6.6576

>NTDB_id=369019 FY148_RS05650 WP_262513387.1 1139913..1142834(+) (uvrA) [Agrobacterium tumefaciens strain Teh002]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSTKWSDLSKDAQHAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRTARDWFEVLPESLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=369019 FY148_RS05650 WP_262513387.1 1139913..1142834(+) (uvrA) [Agrobacterium tumefaciens strain Teh002]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCGGCAATCTCCATCGAGCAGAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGAGTCCCCTATTCGCCAGCCACCGGCCTGCCGATCGAAAGCCAGA
CGGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTTTATATTCTTGCGCCGATAGTCCGCGGC
CGCAAAGGCGAATATAAGAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTTCCTGCTCTGGACAAGAAATACAAGCACGACATCGACGTGGTGGTCGATCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCT
GACAAGCCCCTGCCGCCGGAAGAAACCGCCGCCGGCGGTTCCGCCAACAAATCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTTGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTTGGCTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCGGAACCGGCA
CGAACGCTGCGGGACGGCGCGATAGCTCCCTGGGCCAAATCATCCTCGCCCTATTACAACCAGACGCTGGAAGCACTCGG
CAAGGCCTTCGGTTTCAAGCTCTCGACCAAGTGGTCCGATCTTTCAAAGGACGCACAGCACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTACCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGTGAGGAAATCGAACGCTACATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCTGTCAAGATCAACAAGCTGCATATTGGTGAAGTCACCCAAA
TGTCGATCCGCACGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAGCCTCAACGCCAAGCAGAACGAAATCGCGGTCCGA
ATCCTCAAGGAAATCCGCGAACGCCTGCGCTTCCTCAATGATGTCGGGCTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACAGGCGTTCTCTATGTTC
TCGACGAGCCCTCGATCGGCCTGCATCAGCGCGACAATGCCCGCCTGCTCGATACACTGAAACATCTGCGCGATATCGGC
AATACGGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCGGATTACGTGGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATAGCCGAAGGCTCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TTTCGGGCGAACTCGGCGTCGCCGTGCCTGCTGAGCGTCGCAAGCCCAAGAAGGGCCGCGAGATCAAGGTGTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTTACGGCAGCTGTGCCGCTCGGTGTTTTCACCGCGGTGACCGGCGTATCAGGCGGCGG
CAAATCCACCTTCCTGATCGAGACGCTCTACAAGTCGGCGGCGCGCCGGGTGATGGGCGCGCGCGAAATCCCGGCGGAAC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTCATTGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGTTCC
AACCCGGCCACCTATACCGGCGCCTTTACACCAATCCGCGACTGGTTTGCCGGCCTGCCGGAAGCCAAGGCGCGCGGTTA
CGCTCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGTGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCACC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCGGT
GCGCGACAAGCTGCAATCGCTTTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACAGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACTGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAGGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCGGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.158

98.356

0.562
  uvrA Streptococcus pneumoniae TIGR4

57.158

98.356

0.562
  uvrA Streptococcus pneumoniae D39

57.158

98.356

0.562

Multiple sequence alignment