Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FIP52_RS10970 Genome accession   NZ_CP041029
Coordinates   1016468..1016713 (-) Length   81 a.a.
NCBI ID   WP_260390460.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WJ4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1017242..1018120 1016468..1016713 flank 529


Gene organization within MGE regions


Location: 1016468..1018120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP52_RS10970 dprA 1016468..1016713 (-) 246 WP_260390460.1 hypothetical protein Machinery gene
  FIP52_RS10975 - 1016741..1017142 (-) 402 Protein_972 DNA-processing protein DprA -
  FIP52_RS04955 (FIP52_04955) - 1017242..1018120 (+) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 8978.52 Da        Isoelectric Point: 4.4720

>NTDB_id=368995 FIP52_RS10970 WP_260390460.1 1016468..1016713(-) (dprA) [Riemerella anatipestifer strain WJ4]
MLKDLDLDNTSKVLELFPLVDVALTPVQKPIYDAIKGGNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRKYSI
I

Nucleotide


Download         Length: 246 bp        

>NTDB_id=368995 FIP52_RS10970 WP_260390460.1 1016468..1016713(-) (dprA) [Riemerella anatipestifer strain WJ4]
TTGCTAAAAGACCTAGATTTGGATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTTAGTTGATGTCGCTTTAACTCCTGT
TCAAAAACCTATTTATGATGCTATTAAAGGAGGTAATGATATTTCTTTAGATGACTTGTCAGAAAAATTAAATCAACCCA
TTTCTAAAGTGTTTCCAGTTTTGTTAGAATTAGAATTATTGGGGTTGATAAGAGCAAATTCTGGGAGGAAATATTCTATC
ATTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(23-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

87.654

100

0.877

Multiple sequence alignment