Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FIP52_RS04925 Genome accession   NZ_CP041029
Coordinates   1012661..1013314 (-) Length   217 a.a.
NCBI ID   WP_038693798.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WJ4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1007661..1018314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP52_RS04910 (FIP52_04910) - 1008476..1009558 (-) 1083 WP_014938012.1 serine hydrolase -
  FIP52_RS04915 (FIP52_04915) - 1009670..1011325 (-) 1656 WP_014938011.1 ribonucleoside-diphosphate reductase subunit alpha -
  FIP52_RS04920 (FIP52_04920) - 1011376..1012350 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  FIP52_RS04925 (FIP52_04925) comF 1012661..1013314 (-) 654 WP_038693798.1 ComF family protein Machinery gene
  FIP52_RS04935 (FIP52_04935) - 1013541..1014092 (-) 552 WP_014938008.1 hypothetical protein -
  FIP52_RS04940 (FIP52_04940) - 1014144..1014794 (-) 651 WP_014938007.1 HD domain-containing protein -
  FIP52_RS04945 (FIP52_04945) gdhA 1014926..1016284 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  FIP52_RS10970 dprA 1016468..1016713 (-) 246 WP_260390460.1 hypothetical protein Machinery gene
  FIP52_RS10975 - 1016741..1017142 (-) 402 Protein_972 DNA-processing protein DprA -
  FIP52_RS04955 (FIP52_04955) - 1017242..1018120 (+) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25329.43 Da        Isoelectric Point: 9.4150

>NTDB_id=368980 FIP52_RS04925 WP_038693798.1 1012661..1013314(-) (comF) [Riemerella anatipestifer strain WJ4]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=368980 FIP52_RS04925 WP_038693798.1 1012661..1013314(-) (comF) [Riemerella anatipestifer strain WJ4]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

89.401

100

0.894

Multiple sequence alignment