Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FY153_RS05420 Genome accession   NZ_CP048481
Coordinates   1076302..1077024 (-) Length   240 a.a.
NCBI ID   WP_020810865.1    Uniprot ID   A0ABD5LSS6
Organism   Agrobacterium tumefaciens strain Tul004     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1071302..1082024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY153_RS05410 (FY153_05380) - 1072772..1075204 (+) 2433 WP_113082587.1 ComEC/Rec2 family competence protein -
  FY153_RS05415 (FY153_05385) - 1075224..1075901 (-) 678 WP_003502589.1 glutathione S-transferase family protein -
  FY153_RS05420 (FY153_05390) dinR/lexA 1076302..1077024 (-) 723 WP_020810865.1 transcriptional repressor LexA Regulator
  FY153_RS05425 (FY153_05395) - 1077236..1078114 (+) 879 WP_187772836.1 VOC family protein -
  FY153_RS05430 (FY153_05400) kdsA 1078114..1078959 (+) 846 WP_080866119.1 3-deoxy-8-phosphooctulonate synthase -
  FY153_RS05435 (FY153_05405) eno 1079107..1080381 (+) 1275 WP_003502596.1 phosphopyruvate hydratase -
  FY153_RS05440 (FY153_05410) - 1080686..1081003 (+) 318 WP_003502598.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25960.88 Da        Isoelectric Point: 9.3311

>NTDB_id=368941 FY153_RS05420 WP_020810865.1 1076302..1077024(-) (dinR/lexA) [Agrobacterium tumefaciens strain Tul004]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKASEAAPAPKTPANDLVGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=368941 FY153_RS05420 WP_020810865.1 1076302..1077024(-) (dinR/lexA) [Agrobacterium tumefaciens strain Tul004]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCATCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCCTCGAAATCTGGCATCCACCGCCTGATCACCGCCCTCGAAGAGCGCGGGTTTA
TTCGCCGGCTACCAAATAGAGCGCGAGCGCTGGAAGTCATCAAGCTGCCTGAGGCCTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCGTCATCGAAGGCAGCCTTGGCAAACCCAAGGCGTCGGAAGCGGCCCCTGCCCCCAAGACGCC
GGCCAATGATCTCGTCGGGGCCGTCACCGTGCCGGTCATGGGCCGCATCGCTGCCGGTGTGCCGATTTCCGCCATCCAGA
ACAATACCCACGATGTGGCCGTGCCTGTTGATATGCTGGGTTCGGGCGAACATTACGCTCTTGAGGTCAAGGGCGACTCG
ATGATCGAGGCCGGCATTTTTGATGGCGATACCGTCATCATCCGCAATGGCAATACGGCGAATCCGGGTGATATCGTCGT
AGCGCTGGTGGATGATGAGGAAGCCACCCTGAAGCGTTTCCGTCGCAAGGGCGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAAACGCGTATTTTTGGACCGGACCGGGTGAAAATCCAGGGCAAGCTGGTAGGGCTGATCCGCCGTTACCAT
TGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-63)

Peptidase S24-like (Peptidase_S24)

(118-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LSS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363

Multiple sequence alignment