Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   FY153_RS01970 Genome accession   NZ_CP048481
Coordinates   394703..396535 (-) Length   610 a.a.
NCBI ID   WP_111817177.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Tul004     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389703..401535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY153_RS01945 (FY153_01955) - 390394..390633 (+) 240 WP_003503155.1 DUF4170 domain-containing protein -
  FY153_RS01950 (FY153_01960) waaA 390849..392171 (+) 1323 WP_020010543.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FY153_RS01955 (FY153_01965) - 392165..392902 (+) 738 WP_111833678.1 HAD family hydrolase -
  FY153_RS01960 (FY153_01970) lpxK 393051..394097 (+) 1047 WP_262513303.1 tetraacyldisaccharide 4'-kinase -
  FY153_RS01965 (FY153_01975) - 394330..394551 (-) 222 WP_003503147.1 DUF2093 domain-containing protein -
  FY153_RS01970 (FY153_01980) hexB 394703..396535 (-) 1833 WP_111817177.1 DNA mismatch repair endonuclease MutL Machinery gene
  FY153_RS01975 (FY153_01985) - 396945..398564 (+) 1620 WP_065694953.1 response regulator -
  FY153_RS01980 (FY153_01990) - 398651..400003 (+) 1353 WP_003503140.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  FY153_RS01985 (FY153_01995) - 400192..401079 (-) 888 WP_262513304.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65590.44 Da        Isoelectric Point: 6.0819

>NTDB_id=368932 FY153_RS01970 WP_111817177.1 394703..396535(-) (hexB) [Agrobacterium tumefaciens strain Tul004]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
SDTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSGIRPSPSMAAAAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREIYETATSPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHSAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=368932 FY153_RS01970 WP_111817177.1 394703..396535(-) (hexB) [Agrobacterium tumefaciens strain Tul004]
ATGGCCATCAAGCAGCTTTCAGAAACCCTTATCAACCAGATCGCCGCCGGCGAGGTCATCGAGAGACCCTCCAGCGCCAC
GAAGGAACTGGTGGAAAACGCCATCGACGCTGGCGCGACCAGGATCGAGATCGCCACGGCGGGCGGCGGCAAGGGGCTGG
TGCGGATTACCGATAACGGTTCCGGCATGTCACCTGCCGATCTGGAGCTTGCGGTCAGGCGTCACTGCACCTCGAAAATT
TCCGATACGCTGGATGATATCCGCACGCTCGGGTTTCGTGGCGAGGCGCTGCCCTCCATCGGCTCGGTCGCCAAGCTGAC
GATTACCAGCCGCCAACAGGGCGCAGAACAGGGTTCGGTGATTTCCGTCACCGGCGGCAAGGTTTCCGATGTCCGGCCCG
CCGCCTCGAATGCCGGTACAATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCCGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCCGAGGCGGCCGCGATTACCGAAGTCGTCAAGCGCATGGCGATCGCCTTCCCGCATATCCGTTTCGTGCTATC
AGGCACCGACCGTTCGACGCTCGAAATTCCTTCGACCGGCGACGATCATCTGGCCCGCATGGCGCAGATTCTGGGTGCCG
AGTTCAAGGACAACGCCATCGAGATCGATGCAGGGCGCGAGGATGTGACGTTGACCGGTTTTGCCGGTGTTCCGACCTTC
AATCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAATGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCCGCCATTCG
CGGCGCTTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTTGACCCCGCCTTTGTGG
ATGTGAACGTGCATCCGGCGAAATCCGACGTGCGTTTTCGTGATCCCGGCCTCATTCGCGGGCTAATCGTCGGCGCGATC
CGCCAGGCGTTGACGCGCGACGGCGACAGGGCCGCGACGACGGGCGCGAGCCAGATGATGAATGCGTTCCGCCCCGGCTA
TAGCCCGTCCGGCATCAGGCCCTCGCCTTCCATGGCAGCAGCCGCGCCGTGGTCCGCCGCCACCTCACCGTCGCGGCCGC
TTGCGGTTTCCGGGGACATGCAATTTGCCGAGGCGGTGCAATCGCGCTTTTCCGACATCACCATGCCGACGGCGCGGGCC
GAGCCTCGGGAGATCTACGAGACCGCCACGAGCCCCTCGCCGGAACCCGTGCTTTACCCGCTCGGCGCTGCGCGGGCGCA
GCTGCACGAGAACTACATCATCGCCCAGACGGAAAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAATGCACTGCATTCCCGGCGTCCGCCGTCGCAGGTGCTGCTCATCCCTGAAATCATCGATTTG
CCGGAAGAGGATTGCGACCGGCTGATGGATCACTCCGCCGGGTTCGATGCGCTGGGGCTCGTCATCGAACGTTTCGGGCC
GGGCGCGGTCGCCGTCCGGGAAACGCCTGCCATGCTGGGTGAGGTCAATGTGCAGGGGCTGGTGCGTCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCGGCCACCATGGCCTGCCACGGCTCG
GTGCGTTCCGGCCGGCGTATGCGGCCGGAAGAGATGAACGCGCTTCTACGGCAGATGGAAAACACGCCGGGTTCCGGTCA
ATGCAATCATGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.003

100

0.361