Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FY154_RS13055 Genome accession   NZ_CP048477
Coordinates   2658319..2660127 (+) Length   602 a.a.
NCBI ID   WP_112356111.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Yol001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2653319..2665127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY154_RS13055 (FY154_12990) recQ 2658319..2660127 (+) 1809 WP_112356111.1 DNA helicase RecQ Machinery gene
  FY154_RS13060 (FY154_12995) - 2660186..2661418 (-) 1233 WP_112356109.1 ROK family transcriptional regulator -
  FY154_RS13065 (FY154_13000) - 2661682..2662704 (+) 1023 WP_262514177.1 sugar ABC transporter substrate-binding protein -
  FY154_RS13070 (FY154_13005) - 2662933..2664015 (+) 1083 WP_087743130.1 ABC transporter permease -
  FY154_RS13075 (FY154_13010) - 2664015..2664797 (+) 783 WP_003507135.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67096.80 Da        Isoelectric Point: 6.3343

>NTDB_id=368925 FY154_RS13055 WP_112356111.1 2658319..2660127(+) (recQ) [Agrobacterium tumefaciens strain Yol001]
MTDDPLHILKTVYGYDVFRGRQAEIIRHVVAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKDRDSESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNAVSAILPESDRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=368925 FY154_RS13055 WP_112356111.1 2658319..2660127(+) (recQ) [Agrobacterium tumefaciens strain Yol001]
GTGACCGATGATCCCTTGCATATACTCAAGACCGTCTATGGCTACGATGTGTTTCGCGGGCGGCAGGCCGAAATCATCCG
GCATGTGGTGGCGGGCAATAATGCTTTCGTTCTGATGCCGACAGGTGGTGGCAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCGCGCGACGGCATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTAGATCAGGTCGCTGCCCTGCGTCAGGCA
GGCGTGCGGGCCGAGGCTCTCAATTCCGATCTTTCTCCGGAAGAGCGGCGTGCGCTTTGGCGGGATATGCGGGCAGGCAA
AGTGGATATTCTTTATGCCGCACCGGAAACCCTTCTCAAACCGGATGTCCTGGACGCTCTCCAGCCCATTGCCCTGTCGT
TGATCGCTATCGACGAAGCCCATTGTCTGTCTCAATGGGGGCATGATTTCCGGCCACCCTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCAACGGCCGATGGGCCTACGCGCACCGAAATTCTCGGTCA
CCTGGGAATCGAAGAGGATGACGCCTTCATCGCCGGCTTCGATAGGCCCAATATTCGCTATGCGATCATGGAAAAGGATA
ATCCACGCGCGCAGCTGAAGCGCTTTTTGAAGGACCGCGACAGTGAAAGCGGGATCGTCTATTGCCTTTCCAAACGGAAG
GTGGACGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGATGCACTGCCCTATCACGCTGGGATGGACAAGGCCGCCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGCATGGGCATAGACA
AGCCCGATGTGCGCTTCGTCGTTCATATTGATCTGCCCGGCAGCATCGAAGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGATGGTCTGCCATCGGACGTACTCATGCTCTACGGTTACGAAGACATCGCCCTGCGCAACCGCTTTATCGAAGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGACGCGCTGCTCGGCCTTGCGGAAACCGCGAGCTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTGAGCCCTGCGGCAATTGCGATACCTGCGCCGAGCCGCCCGAC
CTGTTTGACGGGGCCATAGCCGCACAGAAGCTTCTGTCCTGCATTTATCGCACGGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTGTTGCTGGGTGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGCA
AGGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGG
CATGGTGGACTGTCCATTTCCGAGGACGGACGGCGTTTCCTGCGCGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCCGCCCGGCAACAGACGCCCCGCAACGCGGTATCGGCGATTTTGCCTGAATCCGATCGCAGTCTTTTTGAGG
CACTGCGTGCGAAACGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTACGTGATTTTCCACGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCGGCGAAGGAAATGGCTGGGATTCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCTGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(398-509)

DEAD/DEAH box helicase (DEAD)

(22-177)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.919

99.003

0.375