Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY154_RS07250 Genome accession   NZ_CP048477
Coordinates   1440288..1442393 (+) Length   701 a.a.
NCBI ID   WP_262514459.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Yol001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435288..1447393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY154_RS07235 (FY154_07165) - 1435796..1436137 (-) 342 WP_003508033.1 hypothetical protein -
  FY154_RS07240 (FY154_07170) mfd 1436287..1439784 (-) 3498 WP_262514458.1 transcription-repair coupling factor -
  FY154_RS07245 (FY154_07175) - 1439788..1440099 (-) 312 WP_003508031.1 succinate dehydrogenase assembly factor 2 -
  FY154_RS07250 (FY154_07180) recG 1440288..1442393 (+) 2106 WP_262514459.1 ATP-dependent DNA helicase RecG Machinery gene
  FY154_RS07255 (FY154_07185) - 1442406..1442678 (+) 273 WP_003508029.1 hypothetical protein -
  FY154_RS07260 (FY154_07190) - 1442733..1442990 (+) 258 WP_003508026.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY154_RS07265 (FY154_07195) - 1442987..1443370 (+) 384 WP_003508024.1 type II toxin-antitoxin system VapC family toxin -
  FY154_RS07270 (FY154_07200) - 1443374..1444042 (-) 669 WP_003508022.1 DUF502 domain-containing protein -
  FY154_RS07275 (FY154_07205) - 1444056..1444559 (-) 504 WP_060726324.1 GNAT family N-acetyltransferase -
  FY154_RS07280 (FY154_07210) glmS 1444556..1446382 (-) 1827 WP_020809235.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76409.04 Da        Isoelectric Point: 7.2726

>NTDB_id=368909 FY154_RS07250 WP_262514459.1 1440288..1442393(+) (recG) [Agrobacterium tumefaciens strain Yol001]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENAEDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPTGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAESLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTPSQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSASYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=368909 FY154_RS07250 WP_262514459.1 1440288..1442393(+) (recG) [Agrobacterium tumefaciens strain Yol001]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCCGGTGTAGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTCCTGAGCCGGGAAAATGCCGAAGACACCCGCGTGATCGATCTCCTGTTCCACGCGCCATCGAACGTTATCG
ACCGCCGAAACCGCCCCGGCATCGCGCTGGCCGCGCCCGGCGCCATTGTCACCATTCAGGGACGAGTGGACCGCCACCAG
CCGCCACCGACGGGAAACCGCTCCGCGCCCTATCGCGTCTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCGCTGCCCGTCGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ATGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTTTCCGAGGCCGAAAGCCTGCCACTTGTGGAAGCCGTT
TATCCCATGACCGCCGGACTGTCCCCCAAGGTGCTGCGGCGGGCGATCGAAGGCGGGCTATCGAAGCTGCCGGTCTTTCC
GGAGTGGATCGATGAAACGCTGAAGACCCGGCAAGGCTTCGGCGATGTCGCTTCGAGCTTCCGTGAGTTGCACGACCCGC
GTGACAGCGCCGATATCGAGCCGCAGGCTCCAGCGCGCAGGCGGCTTGCCTATGACGAATTCCTCGCCGGGCAGCTGTCA
CTCGCATTGGTGCGTCAGCGGCTGCGCAAAGTGGCGGGCCAGCCGATCCGCGCCAAGGGTGATGTCGCCGCAAAAATCCT
GTCGCAACTGCCCTTCTCGCTGACACCGAGCCAGAGCGCTGCGGTGAAGGATATTCTGACTGACATGGCCGGCGAAGACC
GCATGCTTCGCCTGCTGCAGGGCGATGTCGGCGCAGGCAAGACGCTGGTGGCGCTGATGGCGATGGCAACGGCCGTGGAG
GCCGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGGCAGCACTACGCCACCATTTCCAAGCTCGCTCA
GGCCGCGGGCATTACCGTCGAAGTGCTGACCGGTCGCACCAAGGGCAAGGAGCGGCGCGAGATCGAGGAGCGCGTCGCAT
CAGGTGAGGCACAGATCGTCATCGGCACCCATGCGTTGTTTCAGGACAGCGCGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTTCATCAACGCCTGCGCCTCACCGCCAAGGGCATCACCCCGCATATGCTGGTCAT
GACTGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTTTCGAAGCTCACCGAAAAGCCGG
CCGGCCGCAAACCTATCCAAACGGTGACGATCCCCACCGAACGGATCGGCGACATTGTCGAGCGGCTGCGTTCCGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGACCTTATGTCGGCGGAGGAGCG
GCACGCAGTTCTCTCGCAGATGCTGGGCGCCAATATCGGCCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGCGAAACCCGGCTGTTGGTGGCAACGACGGTGGTGGAAGTGGGCGTCGATGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGGCTTTCCATCCTGCGTG
ACAGCGAGGATGGCTTCCTGATCGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAGTTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGATTCCGCATCGCCAGCCTGGAAGCCCACGCCGACCTTCTGGAAATCGCCCGCAAGGACGCGGCCTACGT
CATCGAGCGCGACCCCGAACTGACGGGCCCGCGCGGCAATGCGCTGCGCACCCTGCTCTACCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(476-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)

DEAD/DEAH box helicase (DEAD)

(275-432)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

41.867

94.722

0.397
  recG/mmsA Streptococcus pneumoniae R6

39.354

97.147

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.354

97.147

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

38.848

96.576

0.375

Multiple sequence alignment