Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GXM24_RS05015 Genome accession   NZ_CP048439
Coordinates   1048503..1049018 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NBRC 3301     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043503..1054018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXM24_RS04970 (GXM24_04970) csrA 1044090..1044275 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GXM24_RS05000 (GXM24_05000) yqaB 1045733..1046299 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GXM24_RS05005 (GXM24_05005) yqaA 1046296..1046724 (+) 429 WP_001287454.1 YqaA family protein -
  GXM24_RS05010 (GXM24_05010) gshA 1046797..1048353 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GXM24_RS05015 (GXM24_05015) luxS 1048503..1049018 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GXM24_RS05020 (GXM24_05020) emrB 1049082..1050620 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GXM24_RS05025 (GXM24_05025) emrA 1050637..1051809 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GXM24_RS05030 (GXM24_05030) emrR 1051936..1052466 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GXM24_RS05040 (GXM24_05040) ygaH 1052557..1052892 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GXM24_RS05045 (GXM24_05045) ygaZ 1052882..1053619 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=368757 GXM24_RS05015 WP_001130211.1 1048503..1049018(+) (luxS) [Escherichia coli strain NBRC 3301]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=368757 GXM24_RS05015 WP_001130211.1 1048503..1049018(+) (luxS) [Escherichia coli strain NBRC 3301]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment