Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SVI_RS18635 Genome accession   NC_014012
Coordinates   4520423..4521946 (+) Length   507 a.a.
NCBI ID   WP_013053211.1    Uniprot ID   D4ZD25
Organism   Shewanella violacea DSS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4515423..4526946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVI_RS18615 (SVI_3945) - 4516780..4517403 (-) 624 WP_013053207.1 glutathione S-transferase family protein -
  SVI_RS18620 (SVI_3946) - 4517416..4518102 (-) 687 WP_013053208.1 type 1 glutamine amidotransferase domain-containing protein -
  SVI_RS18625 (SVI_3947) - 4518194..4519351 (-) 1158 WP_013053209.1 iron-containing alcohol dehydrogenase -
  SVI_RS18630 (SVI_3948) - 4519516..4520118 (-) 603 WP_013053210.1 TetR/AcrR family transcriptional regulator -
  SVI_RS18635 (SVI_3949) comM 4520423..4521946 (+) 1524 WP_013053211.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SVI_RS18640 (SVI_3950) - 4522221..4523126 (+) 906 WP_013053212.1 acyltransferase -
  SVI_RS18645 (SVI_3951) - 4523134..4524078 (+) 945 WP_013053213.1 acyltransferase -
  SVI_RS18650 (SVI_3952) - 4524196..4524390 (+) 195 WP_041420095.1 hypothetical protein -
  SVI_RS21625 (SVI_3953) - 4524508..4524684 (+) 177 WP_231847751.1 hypothetical protein -
  SVI_RS18655 (SVI_3955) - 4525181..4525594 (+) 414 WP_013053217.1 hypothetical protein -
  SVI_RS18660 (SVI_3956) - 4525703..4526791 (-) 1089 WP_013053218.1 branched-chain amino acid aminotransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55415.00 Da        Isoelectric Point: 9.2093

>NTDB_id=36869 SVI_RS18635 WP_013053211.1 4520423..4521946(+) (comM) [Shewanella violacea DSS12]
MAIACVATRANKGVDAPAVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPKQAVKDHEFIGELALSGHIRHCPGLLPVIVEAQKQDTHLVIPLDNRADAELVGFNKVYFATHL
QGLSEYLHGQTRLPGIEPGLEWIQAPDIDTHLCFSDVIGQYQAKLGLEIAAAGNHNLLLLGPPGTGKSMLANRLMQLLPP
LNYDEALEVATLHSVAGQSIDPKSFYKRPFRNPHHTSSAVSLVGGGTYPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMESGEVVISRAAAKLKFLSRFQLIAAMNPSPCGDIDNARATPDQIQRYLSRLSGPFLDRFDLTIEVPRLPAGALTKPEP
SAETSASIAQRVKMARESQLARAGVLNSDLTGKQLKQLGHFKQADLLFLEMSINKLGLSVRSYHRLQRVARTIADLHQSV
TVERRHIAQALGYRAMDRLLHSLKAQY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=36869 SVI_RS18635 WP_013053211.1 4520423..4521946(+) (comM) [Shewanella violacea DSS12]
ATGGCCATCGCCTGTGTCGCTACCAGAGCCAACAAGGGAGTCGATGCCCCAGCCGTTACCGTCGAAGTTCATCTCAGTAA
TGGTTTACCCGCATTCAACCTCGTAGGCTTGCCAGAAACTTCGGTCAAGGAAGCCAAAGAGCGAGTTCGCAGCGCAATTA
TTAACGCAGGATTCGAGTTCCCCATGCGCCGCATCACAGTCAATCTGGCACCGGCAGATCTCCCCAAACAAGGCGGGCGT
TACGATCTGCCCATTGCCATCGGCATTCTGGCTGCATCGAAACAAATCCCCAAGCAGGCAGTTAAAGATCATGAGTTTAT
TGGAGAGCTGGCCCTCTCTGGTCACATAAGGCATTGCCCGGGATTGCTGCCTGTTATCGTTGAGGCGCAAAAACAAGATA
CCCATCTGGTGATCCCCTTGGATAACCGAGCAGATGCCGAACTAGTGGGTTTCAATAAGGTTTATTTTGCCACCCACCTG
CAAGGTTTAAGCGAATACCTCCACGGACAGACGAGATTGCCGGGTATAGAGCCGGGACTGGAATGGATACAAGCACCAGA
TATCGACACTCATCTCTGCTTTAGCGATGTAATAGGTCAATACCAGGCCAAGCTCGGCTTAGAAATTGCTGCAGCCGGTA
ACCATAACTTGCTCTTACTAGGGCCACCAGGCACAGGCAAGAGCATGCTTGCCAATCGTTTAATGCAGCTGTTGCCACCA
CTCAACTACGATGAGGCTCTGGAAGTCGCCACCTTACACTCGGTAGCGGGTCAATCTATCGACCCAAAATCTTTTTACAA
GCGTCCCTTTCGCAATCCCCATCACACTAGCTCGGCGGTCTCTTTGGTTGGCGGCGGCACTTATCCTAAACCAGGTGAGA
TATCTCTGGCTCACAGGGGCGTGCTCTTTCTTGACGAAGTGGCCGAATTTCCTCGAAAAGTCCTCGACTGCCTGCGTGAA
CCCATGGAAAGTGGCGAGGTGGTTATCTCCCGCGCCGCGGCTAAGCTTAAATTTTTAAGTCGCTTTCAGCTGATAGCGGC
GATGAATCCTAGCCCATGTGGCGATATCGATAACGCCAGAGCTACGCCAGATCAGATACAAAGATACCTGTCTCGCTTAT
CCGGTCCCTTCTTGGATAGGTTCGATCTCACCATAGAGGTCCCTCGCCTCCCCGCCGGAGCCTTAACCAAACCAGAGCCA
TCGGCAGAAACCAGCGCTTCCATTGCTCAACGCGTTAAAATGGCCAGAGAGTCACAACTGGCCCGAGCAGGCGTACTCAA
TAGCGACTTAACCGGCAAGCAACTTAAACAGCTAGGTCATTTTAAACAAGCCGATCTACTTTTTCTGGAGATGAGCATCA
ACAAGCTTGGCTTGTCGGTAAGAAGCTATCATCGCTTACAAAGAGTCGCCCGCACCATTGCCGACTTACACCAGAGTGTG
ACTGTAGAGCGTAGACACATAGCCCAAGCCTTGGGATACAGAGCCATGGACCGACTACTGCATAGCTTAAAGGCCCAATA
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4ZD25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.773

100

0.562
  comM Haemophilus influenzae Rd KW20

54.224

100

0.544
  comM Vibrio campbellii strain DS40M4

54.028

100

0.542
  comM Glaesserella parasuis strain SC1401

52.849

100

0.531
  comM Legionella pneumophila str. Paris

50

99.014

0.495
  comM Legionella pneumophila strain ERS1305867

50

99.014

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42

98.619

0.414

Multiple sequence alignment