Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GZ067_RS02780 Genome accession   NZ_CP048431
Coordinates   531741..532367 (-) Length   208 a.a.
NCBI ID   WP_241003720.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA1428     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 526741..537367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ067_RS02760 (GZ067_02760) - 527316..528002 (+) 687 WP_000362218.1 DnaD domain-containing protein -
  GZ067_RS02765 (GZ067_02765) nth 527992..528651 (+) 660 WP_000253765.1 endonuclease III -
  GZ067_RS02770 (GZ067_02770) - 528656..528997 (+) 342 WP_000182026.1 YpoC family protein -
  GZ067_RS02775 (GZ067_02775) - 529561..531744 (-) 2184 WP_000138348.1 transglycosylase domain-containing protein -
  GZ067_RS02780 (GZ067_02780) recU 531741..532367 (-) 627 WP_241003720.1 Holliday junction resolvase RecU Machinery gene
  GZ067_RS02785 (GZ067_02785) - 532673..532852 (+) 180 WP_001815491.1 hypothetical protein -
  GZ067_RS02790 (GZ067_02790) - 532907..533257 (+) 351 WP_001000806.1 YppE family protein -
  GZ067_RS02795 (GZ067_02795) - 533250..533813 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  GZ067_RS02800 (GZ067_02800) gpsB 533827..534171 (+) 345 WP_001286320.1 cell division regulator GpsB -
  GZ067_RS02810 (GZ067_02810) - 534822..535967 (+) 1146 WP_000487144.1 class I SAM-dependent RNA methyltransferase -
  GZ067_RS02815 (GZ067_02815) - 536051..536383 (+) 333 WP_000516794.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24457.84 Da        Isoelectric Point: 9.7084

>NTDB_id=368677 GZ067_RS02780 WP_241003720.1 531741..532367(-) (recU) [Staphylococcus aureus strain SA1428]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=368677 GZ067_RS02780 WP_241003720.1 531741..532367(-) (recU) [Staphylococcus aureus strain SA1428]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCTTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529