Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GZH78_RS27990 Genome accession   NZ_CP048408
Coordinates   6217101..6217505 (-) Length   134 a.a.
NCBI ID   WP_007953330.1    Uniprot ID   A0ABM5ZLE5
Organism   Pseudomonas fluorescens strain DR397     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6212101..6222505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS27975 (GZH78_27985) - 6214051..6216111 (-) 2061 WP_039767943.1 methyl-accepting chemotaxis protein -
  GZH78_RS27980 (GZH78_27990) - 6216125..6216664 (-) 540 WP_039767942.1 chemotaxis protein CheW -
  GZH78_RS27985 (GZH78_27995) pilH 6216675..6217040 (-) 366 WP_011336365.1 twitching motility response regulator PilH -
  GZH78_RS27990 (GZH78_28000) pilG 6217101..6217505 (-) 405 WP_007953330.1 twitching motility response regulator PilG Regulator
  GZH78_RS27995 (GZH78_28005) gshB 6217730..6218701 (+) 972 WP_103385349.1 glutathione synthase -
  GZH78_RS28000 (GZH78_28010) - 6218808..6219707 (+) 900 WP_039767939.1 energy transducer TonB -
  GZH78_RS28005 (GZH78_28015) - 6219767..6220339 (+) 573 WP_011336368.1 YqgE/AlgH family protein -
  GZH78_RS28010 (GZH78_28020) ruvX 6220339..6220776 (+) 438 WP_007953334.1 Holliday junction resolvase RuvX -
  GZH78_RS28015 (GZH78_28025) pyrR 6220858..6221361 (+) 504 WP_039767937.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GZH78_RS28020 (GZH78_28030) - 6221389..6222393 (+) 1005 WP_007913665.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14532.86 Da        Isoelectric Point: 6.7107

>NTDB_id=368641 GZH78_RS27990 WP_007953330.1 6217101..6217505(-) (pilG) [Pseudomonas fluorescens strain DR397]
MEQQSSALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNNNAFK
GTPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLDAISAHVPGFAAALPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=368641 GZH78_RS27990 WP_007953330.1 6217101..6217505(-) (pilG) [Pseudomonas fluorescens strain DR397]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGACGACTCGAAAACGATTCGTCGCACCGCCGAGACCCTGTT
GAAAAATGCAGGGTGCGAAGTCATCACCGCGATCGACGGTTTTGACGCCCTGGCGAAGATCGCCGACCACCATCCCGGGA
TCATCTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAATGCGTTCAAG
GGCACGCCGGTGATCATGCTGTCGTCCCGGGACGGGCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCGACGCGATTTCGGCCCATGTTCCGGGCTTCGCTGCCGCTTTGCCGC
AGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

93.284

0.694

Multiple sequence alignment