Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZH78_RS23515 Genome accession   NZ_CP048408
Coordinates   5237862..5239292 (-) Length   476 a.a.
NCBI ID   WP_039765967.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5232862..5244292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS23490 (GZH78_23500) - 5233100..5234212 (+) 1113 WP_085667949.1 glycosyltransferase family 1 protein -
  GZH78_RS23495 (GZH78_23505) - 5234205..5234981 (+) 777 WP_163976274.1 polysaccharide deacetylase family protein -
  GZH78_RS23500 (GZH78_23510) - 5234978..5235976 (+) 999 WP_163976277.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GZH78_RS29110 - 5235960..5236136 (-) 177 WP_007951232.1 hypothetical protein -
  GZH78_RS23505 (GZH78_23515) purU 5236195..5237043 (-) 849 WP_011335666.1 formyltetrahydrofolate deformylase -
  GZH78_RS23510 (GZH78_23520) mvaT 5237383..5237760 (+) 378 WP_007951234.1 histone-like nucleoid-structuring protein MvaT -
  GZH78_RS23515 (GZH78_23525) sbcB 5237862..5239292 (-) 1431 WP_039765967.1 exodeoxyribonuclease I Machinery gene
  GZH78_RS23520 (GZH78_23530) - 5239473..5240198 (+) 726 WP_039765965.1 RDD family protein -
  GZH78_RS23525 (GZH78_23535) - 5240195..5241172 (+) 978 WP_163976279.1 stage II sporulation protein M -
  GZH78_RS23530 (GZH78_23540) - 5241159..5242703 (+) 1545 WP_163976281.1 DUF4129 domain-containing protein -
  GZH78_RS23535 (GZH78_23545) - 5242700..5243866 (+) 1167 WP_163976283.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54761.08 Da        Isoelectric Point: 5.2755

>NTDB_id=368620 GZH78_RS23515 WP_039765967.1 5237862..5239292(-) (sbcB) [Pseudomonas fluorescens strain DR397]
MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITGITPSRLAEQGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLE
RLTAANNIDHGNAHEALSDVRATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPL
AWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCPVVAPLAVLRAEDQQRLGLDMA
LYQARALRLSDAQQVWKDKVSAIYASEDFASSEDPEQQLYDGFIGDRDRRLCEQVRATDPAQLAREQWPFDDERLPELLF
RYRARNFPDTLNFEEQERWKIFCRQRLSEPEWGAPNTLQSFAEAMEQWRVSAAPMQAEVLVEWQNYVQALRKRLNL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=368620 GZH78_RS23515 WP_039765967.1 5237862..5239292(-) (sbcB) [Pseudomonas fluorescens strain DR397]
GTGACTTCCATTTTCTGGTACGACTACGAAACCACCGGCATCAATCCCCGATGCGACCGCCCGTTGCAGGTGGCCGGGAT
CCGCACCGACCACGAACTCAACGAAATCGACGCGCCGGTCAATCTCTACTGCCAGCCCAGCGAAGACATCCTGCCGCACC
CGGCGGCGTGCGCAATCACCGGCATCACCCCGAGTCGCCTCGCCGAACAGGGCTTGAGCGAAGCCGACTTCATGACCCGG
GTCCACGCCCAGCTCGCGGCTCCCGGTACCTGCGGCGCGGGTTACAACACCTTGCGCTTCGACGACGAGATGACCCGCTA
CAGCCTGTACCGCAACTTTTTCGATCCCTACGCCCGTGAATGGCAGGGCGGCAACAGTCGCTGGGATCTGATCGATGTGG
TGCGCGCCGCCTACGCATTGCGCCCGGACGGGCTGGTCTGGCCGACCGACGACGAAGGCAAGGTGACGCTCAAGCTCGAA
CGTCTGACCGCCGCCAACAACATCGACCACGGCAATGCTCACGAAGCGTTGTCGGACGTACGCGCCACCATCGCCCTGGC
CCGGTTGATCCGCGAGAAGCAGCCGAAGCTGTATGACTGGCTGTTCCAGCTGCGCAGCAAACAGAAGGTCATGGACCAGA
TTCGCCTGTTGCAGCCGATGGTGCACATTTCCGGACGCTTCTCCGCTGCGCGCAGTTATGTCGGCGTGGTGCTGCCGCTG
GCCTGGCATCCGCGCAACAAGAACGCGCTGATCGTGTGTGATCTGCACCTGGATCCGCAGGGTCTGCTCGACCTGGATGC
CGAAACATTGCGTCAGCGCCTGTATACCCGCCGTGACGATCTGGCCGAAGGCGAGTTGCCGGTGCCGCTCAAACTCATCC
ACATCAACAAGTGCCCGGTGGTGGCGCCGTTGGCGGTGCTGCGTGCTGAAGATCAGCAGCGTCTGGGTCTGGACATGGCG
TTGTATCAGGCGCGTGCATTGCGACTAAGTGACGCACAACAAGTTTGGAAAGATAAAGTCTCGGCGATTTATGCCAGCGA
AGATTTCGCCTCGAGTGAAGATCCCGAACAACAGTTGTACGACGGATTTATCGGTGATCGCGATCGTCGTTTATGTGAGC
AAGTGAGGGCGACCGATCCTGCTCAATTGGCGCGAGAGCAATGGCCGTTCGATGATGAACGTTTGCCTGAATTGTTGTTT
CGATATCGAGCACGTAACTTTCCCGATACGTTGAATTTCGAAGAGCAAGAGCGCTGGAAAATCTTTTGTCGGCAACGCCT
GTCCGAGCCGGAGTGGGGGGCGCCTAATACCTTGCAATCTTTTGCCGAGGCCATGGAGCAATGGCGGGTTAGTGCTGCGC
CGATGCAGGCCGAGGTGCTGGTTGAATGGCAGAACTATGTCCAGGCATTGCGCAAACGTTTGAATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(6-186)

Exonuclease C-terminal (ExoI_SH3)

(205-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

45.745

98.739

0.452

Multiple sequence alignment