Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GZH78_RS20620 Genome accession   NZ_CP048408
Coordinates   4619212..4619820 (+) Length   202 a.a.
NCBI ID   WP_007953044.1    Uniprot ID   A0ABM5ZK13
Organism   Pseudomonas fluorescens strain DR397     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4614212..4624820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS20605 (GZH78_20610) - 4616354..4617091 (-) 738 WP_007953033.1 S-methyl-5'-thioinosine phosphorylase -
  GZH78_RS20610 (GZH78_20615) nagZ 4617105..4618103 (-) 999 WP_170844907.1 beta-N-acetylhexosaminidase -
  GZH78_RS20615 (GZH78_20620) - 4618274..4618981 (-) 708 WP_007953037.1 TetR/AcrR family transcriptional regulator -
  GZH78_RS20620 (GZH78_20625) dinR/lexA 4619212..4619820 (+) 609 WP_007953044.1 transcriptional repressor LexA Regulator
  GZH78_RS20625 (GZH78_20630) sulA 4619831..4620304 (+) 474 WP_039772796.1 SOS-induced cell division inhibitor SulA -
  GZH78_RS20630 (GZH78_20635) - 4620391..4620624 (-) 234 WP_007953047.1 hypothetical protein -
  GZH78_RS20635 (GZH78_20640) - 4620731..4621255 (-) 525 WP_039772797.1 DUF6586 family protein -
  GZH78_RS20640 (GZH78_20645) topA 4621430..4624060 (-) 2631 WP_085667448.1 type I DNA topoisomerase -
  GZH78_RS20645 (GZH78_20650) - 4624175..4624411 (-) 237 WP_007953059.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22282.76 Da        Isoelectric Point: 7.3868

>NTDB_id=368608 GZH78_RS20620 WP_007953044.1 4619212..4619820(+) (dinR/lexA) [Pseudomonas fluorescens strain DR397]
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKVDESTL
PIIGRVAAGAPILAQQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARIGDEVTVK
RFKRDGSKVWLIAENPEFAPIEVNLKDQELVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=368608 GZH78_RS20620 WP_007953044.1 4619212..4619820(+) (dinR/lexA) [Pseudomonas fluorescens strain DR397]
ATGCTTAAGCTGACGCCACGCCAAGCCGAGATTCTGGCCTTTATCAAACGCTGCCTCGAAGACAACGGCTACCCGCCGAC
CCGTGCGGAAATTGCTCAGGAACTGGGTTTCAAGTCGCCCAACGCGGCCGAAGAGCACCTCAAGGCGCTCGCTCGCAAAG
GCGCAATCGAAATGACTCCGGGCGCCTCTCGCGGCATTCGAATTCCAGGTTTCGAAGCCAAGGTCGACGAGTCCACGCTG
CCGATCATCGGTCGAGTGGCTGCCGGCGCGCCGATTCTCGCTCAGCAACACATCGAAGAGTCCTGCAACATCAACCCGGC
CTTCTTTCATCCGCGCGCCGATTATCTGTTGCGCGTTCATGGCATGAGCATGAAGGACATCGGCATTTTCGACGGTGACC
TGCTGGCGGTTCACACCACCCGCGAGGCACGCAACGGTCAGATCGTGGTTGCGCGGATCGGCGATGAAGTCACCGTCAAA
CGCTTCAAGCGTGACGGCAGTAAAGTCTGGCTGATTGCCGAAAACCCCGAGTTCGCCCCTATCGAAGTCAACCTGAAAGA
CCAGGAGCTGGTTATCGAAGGCTTGAGTGTCGGCGTCATCCGCCGCTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(81-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.391