Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GZH78_RS17190 Genome accession   NZ_CP048408
Coordinates   3875012..3875629 (-) Length   205 a.a.
NCBI ID   WP_064381249.1    Uniprot ID   A0ABN4MP58
Organism   Pseudomonas fluorescens strain DR397     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3870012..3880629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS17180 (GZH78_17185) - 3872972..3874387 (-) 1416 WP_085668236.1 DNA polymerase Y family protein -
  GZH78_RS17185 (GZH78_17190) imuA 3874395..3875012 (-) 618 WP_011334534.1 translesion DNA synthesis-associated protein ImuA -
  GZH78_RS17190 (GZH78_17195) dinR/lexA 3875012..3875629 (-) 618 WP_064381249.1 transcriptional repressor LexA Regulator
  GZH78_RS17195 (GZH78_17200) - 3875800..3876717 (-) 918 WP_085745456.1 LysR family transcriptional regulator -
  GZH78_RS17200 (GZH78_17205) - 3876821..3878578 (+) 1758 WP_163975505.1 amidohydrolase -
  GZH78_RS17205 (GZH78_17210) - 3878678..3879415 (+) 738 WP_163975507.1 TorF family putative porin -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22477.90 Da        Isoelectric Point: 6.4945

>NTDB_id=368594 GZH78_RS17190 WP_064381249.1 3875012..3875629(-) (dinR/lexA) [Pseudomonas fluorescens strain DR397]
MYSMTTLTPRRTAILTFIRERIAEHGQPPSLAEISEAFGFASRSVARKHVLALTEAGFIEVNPHQARGIRLLGQPARPEL
LEVPVLGRVAAGAPIGADADLHNRLMLDPALFSRTPDYMLRVQGDSMIEDGILDGDLVGVRRNPEALNGQIVVARLDGEV
TIKRFERVGDEVRLLPRNPAYQPIVVRADQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=368594 GZH78_RS17190 WP_064381249.1 3875012..3875629(-) (dinR/lexA) [Pseudomonas fluorescens strain DR397]
ATGTACTCCATGACGACTCTGACTCCCCGCCGTACCGCCATCCTGACCTTTATCCGCGAACGCATCGCCGAACACGGTCA
GCCCCCAAGCCTCGCTGAAATCAGCGAGGCTTTTGGTTTCGCCTCCCGCAGCGTGGCGCGCAAGCATGTGCTGGCGCTCA
CCGAAGCCGGGTTCATCGAGGTCAATCCGCATCAGGCCCGGGGCATTCGTTTGCTCGGGCAACCGGCGCGACCGGAACTG
CTCGAAGTGCCGGTGCTTGGCCGGGTGGCCGCCGGTGCGCCCATCGGTGCCGATGCCGACCTGCACAATCGGCTGATGCT
CGACCCGGCGCTGTTCTCCCGCACGCCCGACTACATGCTGCGGGTGCAGGGCGATTCGATGATCGAGGACGGGATTCTCG
ACGGCGATCTGGTTGGCGTGCGGCGCAACCCCGAGGCGCTCAATGGCCAGATCGTGGTGGCACGACTCGACGGTGAGGTC
ACCATCAAACGCTTCGAACGGGTCGGCGATGAGGTTCGCCTGTTGCCGCGCAACCCGGCGTACCAGCCGATTGTGGTGCG
GGCCGATCAGGATCTGGCCATCGAAGGGGTGTTCTGCGGTCTGGTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(84-198)

LexA DNA binding domain (LexA_DNA_bind)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.647

100

0.39