Detailed information NTG0368577

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZH78_RS06900
• Genome accession: NZ_CP048408
• Coordinates: 1575199..1576206 (+)
• Length: 335 a.a.
• NCBI ID: WP_007954831.1
• Uniprot ID: A0A345RLF2
• Organism: Pseudomonas fluorescens strain DR397
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1570199..1581206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZH78_RS06875 (GZH78_06880)	ispF	1571057..1571530 (+)	474	WP_074691309.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZH78_RS06880 (GZH78_06885)	truD	1571527..1572585 (+)	1059	WP_163974104.1	tRNA pseudouridine(13) synthase TruD	-
GZH78_RS06885 (GZH78_06890)	surE	1572573..1573322 (+)	750	WP_039769691.1	5'/3'-nucleotidase SurE	-
GZH78_RS06890 (GZH78_06895)	-	1573364..1573999 (+)	636	WP_170844894.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GZH78_RS06895 (GZH78_06900)	-	1574211..1575092 (+)	882	WP_074691311.1	peptidoglycan DD-metalloendopeptidase family protein	-
GZH78_RS06900 (GZH78_06905)	rpoS	1575199..1576206 (+)	1008	WP_007954831.1	RNA polymerase sigma factor RpoS	Regulator
GZH78_RS06905 (GZH78_06910)	fdxA	1576719..1577042 (-)	324	WP_007908827.1	ferredoxin FdxA	-
GZH78_RS06910 (GZH78_06915)	mutS	1577206..1579788 (-)	2583	WP_039771222.1	DNA mismatch repair protein MutS	-
GZH78_RS06915 (GZH78_06920)	-	1579998..1580732 (+)	735	WP_085666844.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38146.21 Da
• Isoelectric Point: 4.8877

>NTDB_id=368577 GZH78_RS06900 WP_007954831.1 1575199..1576206(+) (rpoS) [Pseudomonas fluorescens strain DR397]
MALSKEVPEFDIDDEVLLMETGIDSDSMSNDEGAAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=368577 GZH78_RS06900 WP_007954831.1 1575199..1576206(+) (rpoS) [Pseudomonas fluorescens strain DR397]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTGATGGAGACCGGCATCGATTCGGATTC
GATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTGCCAAATCCAAACACTCCGCTTCACTTAAACAACATAAGT
ACATCGATTACACTCGGGCACTCGATGCCACGCAGCTGTACCTCAACGAAATCGGCTTTTCCCCTCTGCTCTCCCCGGAA
GAAGAAGTTCATTTTGCGCGCTTGTCGCAAAGTGGCGATCCTGCCGGGCGCAAGCGCATGATCGAAAGTAACCTGCGGCT
GGTGGTCAAAATCGCCCGGCGTTACGTCAATCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGCAACCTCGGACTGA
TCCGCGCGGTGGAAAAGTTCGATCCCGAGCGCGGCTTCCGCTTCTCGACCTACGCGACCTGGTGGATCCGTCAGACCATC
GAACGCGCGATCATGAACCAGACCCGGACCATCCGGTTGCCGATTCATGTGGTCAAGGAACTCAACGTGTACCTGCGGGC
TGCACGGGAGCTGACGCAAAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTGGGCG
AGGTCAAGCGCATGCTGGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACTCTGACGGATGACCGTCCGACCGATCCGTGCGAACTGCTGCAGGATGACGACCTGTCGCAGAGCATCGATCA
GTGGCTCTCGGAGCTGACTGACAAGCAACGCGAAGTGGTGGTACGTCGCTTCGGCCTGCGCGGTCACGAGAGCAGCACGC
TGGAAGATGTAGGTCTGGAGATCGGCCTGACCCGGGAACGGGTGAGACAGATCCAGGTGGAGGGCCTCAAGCGCCTTCGG
GAAATCCTCGAGAAAAACGGTCTGTCGAGCGAGTCGCTGTTCCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A345RLF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.672	100	0.657