Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   FIU11_RS16870 Genome accession   NZ_CP040991
Coordinates   262887..263984 (-) Length   365 a.a.
NCBI ID   WP_004726763.1    Uniprot ID   A0A0Q2SGB9
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 264404..302941 262887..263984 flank 420


Gene organization within MGE regions


Location: 262887..302941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS16870 (FIU11_16870) luxP 262887..263984 (-) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  FIU11_RS16875 (FIU11_16875) - 264404..264694 (-) 291 WP_004726765.1 GIY-YIG nuclease family protein -
  FIU11_RS16880 (FIU11_16880) - 264705..265340 (-) 636 WP_004726766.1 YceH family protein -
  FIU11_RS16885 (FIU11_16885) - 265384..265581 (-) 198 WP_004726768.1 hypothetical protein -
  FIU11_RS16890 (FIU11_16890) - 265771..266088 (+) 318 WP_004726770.1 DUF496 family protein -
  FIU11_RS16895 (FIU11_16895) - 266250..267218 (-) 969 WP_004726771.1 phage integrase -
  FIU11_RS16900 (FIU11_16900) - 267536..268327 (+) 792 WP_004726773.1 DUF3800 domain-containing protein -
  FIU11_RS16905 (FIU11_16905) - 268394..269239 (+) 846 WP_004726775.1 FRG domain-containing protein -
  FIU11_RS16915 (FIU11_16915) - 269378..269938 (+) 561 WP_038151560.1 lasso peptide biosynthesis protein -
  FIU11_RS16925 (FIU11_16925) - 270093..271064 (+) 972 WP_004726778.1 DUF4917 family protein -
  FIU11_RS16930 (FIU11_16930) - 271131..271712 (+) 582 WP_038151562.1 hypothetical protein -
  FIU11_RS16935 (FIU11_16935) - 271859..272152 (-) 294 WP_038151563.1 hypothetical protein -
  FIU11_RS16940 (FIU11_16940) - 272484..273209 (-) 726 WP_038151567.1 phage repressor protein -
  FIU11_RS16945 (FIU11_16945) - 273357..273815 (+) 459 WP_004726785.1 hypothetical protein -
  FIU11_RS16950 (FIU11_16950) - 273873..274412 (+) 540 WP_004726786.1 phage regulatory CII family protein -
  FIU11_RS16955 (FIU11_16955) - 274422..274754 (+) 333 WP_004726788.1 hypothetical protein -
  FIU11_RS16960 (FIU11_16960) - 274827..275138 (+) 312 WP_004726790.1 hypothetical protein -
  FIU11_RS16965 (FIU11_16965) - 275120..275347 (+) 228 WP_004726793.1 hypothetical protein -
  FIU11_RS16970 (FIU11_16970) - 275344..277974 (+) 2631 WP_004726795.1 replication endonuclease -
  FIU11_RS16975 (FIU11_16975) - 277984..278235 (+) 252 WP_004726797.1 ogr/Delta-like zinc finger family protein -
  FIU11_RS23890 (FIU11_16985) - 278484..278840 (+) 357 WP_222748245.1 terminase large subunit domain-containing protein -
  FIU11_RS16990 (FIU11_16990) - 279625..280815 (+) 1191 WP_004726801.1 DNA circularization N-terminal domain-containing protein -
  FIU11_RS16995 (FIU11_16995) - 280812..281750 (+) 939 WP_004726803.1 hypothetical protein -
  FIU11_RS17000 (FIU11_17000) - 281743..282318 (+) 576 WP_004726805.1 phage baseplate assembly protein V -
  FIU11_RS17005 (FIU11_17005) - 282315..282701 (+) 387 WP_014257429.1 phage GP46 family protein -
  FIU11_RS17010 (FIU11_17010) - 282698..283744 (+) 1047 WP_004726809.1 baseplate J/gp47 family protein -
  FIU11_RS17015 (FIU11_17015) - 283726..284205 (+) 480 WP_004726811.1 hypothetical protein -
  FIU11_RS23655 - 284202..285434 (+) 1233 WP_004726813.1 phage tail protein -
  FIU11_RS17025 (FIU11_17025) - 285431..285994 (+) 564 WP_140209446.1 hypothetical protein -
  FIU11_RS17030 (FIU11_17030) - 286110..286526 (+) 417 WP_004726816.1 glycoside hydrolase family protein -
  FIU11_RS17035 (FIU11_17035) - 286537..286767 (+) 231 WP_004726817.1 hypothetical protein -
  FIU11_RS17040 (FIU11_17040) - 286758..287009 (+) 252 WP_004726819.1 hypothetical protein -
  FIU11_RS23660 - 287704..287805 (+) 102 Protein_257 KilA-N domain-containing protein -
  FIU11_RS23665 - 287921..288103 (+) 183 WP_004726823.1 hypothetical protein -
  FIU11_RS17055 (FIU11_17055) - 288233..288721 (-) 489 WP_038151579.1 hypothetical protein -
  FIU11_RS17060 (FIU11_17060) - 288834..289136 (-) 303 WP_038151580.1 hypothetical protein -
  FIU11_RS17065 (FIU11_17065) - 289750..290367 (+) 618 WP_038151583.1 KilA-N domain-containing protein -
  FIU11_RS17070 (FIU11_17070) - 290536..291651 (-) 1116 WP_140209447.1 alpha/beta hydrolase -
  FIU11_RS17075 (FIU11_17075) - 291879..292844 (-) 966 WP_004726828.1 phage portal protein -
  FIU11_RS17080 (FIU11_17080) - 292855..294579 (-) 1725 WP_004726830.1 terminase large subunit domain-containing protein -
  FIU11_RS17085 (FIU11_17085) - 294750..295577 (+) 828 WP_004726833.1 GPO family capsid scaffolding protein -
  FIU11_RS17090 (FIU11_17090) - 295620..296657 (+) 1038 WP_004726835.1 phage major capsid protein, P2 family -
  FIU11_RS17095 (FIU11_17095) - 296766..297215 (+) 450 WP_004726837.1 head completion/stabilization protein -
  FIU11_RS17100 (FIU11_17100) - 297215..297679 (+) 465 WP_004726838.1 phage tail protein -
  FIU11_RS17105 (FIU11_17105) - 297676..298212 (+) 537 WP_004726840.1 phage virion morphogenesis protein -
  FIU11_RS17110 (FIU11_17110) - 298213..298395 (+) 183 WP_004726841.1 DUF2635 domain-containing protein -
  FIU11_RS17115 (FIU11_17115) - 298392..299525 (+) 1134 WP_004726842.1 phage tail sheath subtilisin-like domain-containing protein -
  FIU11_RS17120 (FIU11_17120) - 299529..299894 (+) 366 WP_004726844.1 phage tail tube protein -
  FIU11_RS17125 (FIU11_17125) gpM 299905..300612 (+) 708 WP_004726846.1 phage terminase small subunit -
  FIU11_RS17130 (FIU11_17130) - 300596..300883 (+) 288 WP_004726847.1 phage tail assembly protein -
  FIU11_RS17135 (FIU11_17135) - 300919..301026 (+) 108 WP_081454447.1 GpE family phage tail protein -
  FIU11_RS17140 (FIU11_17140) - 301055..302941 (+) 1887 WP_004726848.1 hypothetical protein -

Sequence


Protein


Download         Length: 365 a.a.        Molecular weight: 41539.74 Da        Isoelectric Point: 5.2793

>NTDB_id=368551 FIU11_RS16870 WP_004726763.1 262887..263984(-) (luxP) [Vibrio furnissii strain FDAARGOS_777]
MKKTLFLSLLLGFTPFASSYSSQVLNGYWHYQEFLNANPQQKALTESLSDAVRQSSQRLTVKQQTPVTISVVYPGQQISD
YWVRNIKAFEMRLEELGIEYQINQVFTRPNQDTRQQSLSLMEAVKNNTDYLIFTLDTTRHRKFIEHVLNSSPTKLILQNI
TTPVRDWDERQPMMYVGFDHELGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMESTGDYQLASSYYTKAT
QESGYEATVNIVKNDPDIKFIYACSTDVALGAAKALQALKREDIQVNGWGGGSAELEALDEGHLDVTVMRINDDTGIAMA
EAIKRDLEGLAVPVVYSGDFEIVTKDDQPKKIGLFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=368551 FIU11_RS16870 WP_004726763.1 262887..263984(-) (luxP) [Vibrio furnissii strain FDAARGOS_777]
ATGAAGAAAACGCTTTTTCTTTCTCTTTTACTTGGTTTCACTCCTTTTGCCTCTTCGTATTCATCACAAGTGCTGAATGG
TTACTGGCATTATCAGGAATTTCTGAATGCCAATCCGCAACAAAAGGCACTGACGGAGTCGTTGTCTGATGCGGTGCGTC
AATCGTCTCAGCGGCTGACGGTCAAACAACAAACGCCGGTGACCATTTCGGTGGTTTATCCGGGGCAGCAGATCTCCGAT
TACTGGGTGCGCAACATCAAAGCGTTTGAAATGCGATTGGAAGAGTTAGGTATTGAATACCAGATTAATCAGGTGTTTAC
GCGCCCGAACCAAGACACTCGTCAACAAAGCTTGTCGTTGATGGAAGCGGTGAAGAACAACACGGATTATTTGATTTTCA
CGCTGGATACAACGCGCCACCGCAAGTTTATTGAACACGTTCTGAATTCGTCACCGACCAAATTGATTTTGCAGAATATC
ACCACGCCGGTTCGAGACTGGGATGAACGCCAGCCGATGATGTACGTTGGGTTTGACCATGAACTCGGTGCGCAGCAACT
TGCGCAGTATTATCGCGAACATGTGCCCAAAGGCAGCAAGTATTCGGTGCTGTATTTTTCTGAAGGGTACGTCAGCGATG
CGCGTGGCGACACTTTCATTCAGCAGATGGAAAGCACGGGCGATTACCAGCTGGCCTCGTCGTATTACACCAAAGCGACC
CAAGAAAGTGGCTATGAAGCCACTGTTAACATTGTCAAAAATGACCCGGATATTAAATTTATTTACGCCTGTTCCACCGA
TGTGGCACTGGGCGCAGCCAAGGCGCTACAAGCGCTAAAACGTGAAGATATTCAGGTGAACGGCTGGGGTGGTGGCTCGG
CAGAGCTAGAAGCCTTGGATGAAGGTCATCTTGATGTTACTGTCATGAGAATCAATGATGATACCGGCATTGCGATGGCG
GAAGCGATCAAACGTGATTTGGAAGGTTTGGCCGTGCCCGTGGTGTATTCCGGTGACTTTGAGATCGTGACCAAAGACGA
TCAGCCGAAAAAAATTGGTTTGTTTAAGCAACGCGCCTTTCGTTATTCCGACCGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0Q2SGB9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704


Multiple sequence alignment