Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FIU11_RS16380 Genome accession   NZ_CP040991
Coordinates   142758..143939 (+) Length   393 a.a.
NCBI ID   WP_004728185.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 137758..148939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS16365 (FIU11_16365) - 138557..139552 (-) 996 WP_004728182.1 CobW family GTP-binding protein -
  FIU11_RS16370 (FIU11_16370) clcA 140023..141420 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  FIU11_RS16375 (FIU11_16375) - 141581..142540 (+) 960 WP_004728184.1 TDT family transporter -
  FIU11_RS16380 (FIU11_16380) cqsA 142758..143939 (+) 1182 WP_004728185.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FIU11_RS16385 (FIU11_16385) cqsS 144101..146152 (-) 2052 WP_004728186.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43557.55 Da        Isoelectric Point: 7.1129

>NTDB_id=368547 FIU11_RS16380 WP_004728185.1 142758..143939(+) (cqsA) [Vibrio furnissii strain FDAARGOS_777]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDQTKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFRNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCQSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=368547 FIU11_RS16380 WP_004728185.1 142758..143939(+) (cqsA) [Vibrio furnissii strain FDAARGOS_777]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCTATTTTCTTACAAGATGATCAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAATCCGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTCTGCGCACCAGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATCTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCACTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTTGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAATGATCGTC
GCAAGAATTTATTTCGCAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGCAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAGGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCATTAACCAGTGCCGTTACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCAAAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.571

97.964

0.672

Multiple sequence alignment