Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   FIU11_RS15340 Genome accession   NZ_CP040990
Coordinates   3170659..3174051 (+) Length   1130 a.a.
NCBI ID   WP_038152685.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 3165659..3179051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS15320 (FIU11_15320) erpA 3166017..3166358 (-) 342 WP_004728986.1 iron-sulfur cluster insertion protein ErpA -
  FIU11_RS15325 (FIU11_15325) hemL 3166670..3167962 (+) 1293 WP_004728988.1 glutamate-1-semialdehyde 2,1-aminomutase -
  FIU11_RS23780 - 3168059..3168181 (-) 123 WP_004728990.1 hypothetical protein -
  FIU11_RS15330 (FIU11_15330) - 3168257..3169342 (+) 1086 WP_004728992.1 AI-2E family transporter -
  FIU11_RS15335 (FIU11_15335) rsmC 3169438..3170460 (+) 1023 WP_004728994.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  FIU11_RS15340 (FIU11_15340) chiS 3170659..3174051 (+) 3393 WP_038152685.1 response regulator Regulator
  FIU11_RS15345 (FIU11_15345) - 3174750..3176420 (+) 1671 WP_004728998.1 ABC transporter substrate-binding protein -
  FIU11_RS15350 (FIU11_15350) - 3176585..3177571 (+) 987 WP_004729000.1 ABC transporter permease -
  FIU11_RS15355 (FIU11_15355) - 3177574..3178599 (+) 1026 WP_004729001.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128102.49 Da        Isoelectric Point: 6.2694

>NTDB_id=368542 FIU11_RS15340 WP_038152685.1 3170659..3174051(+) (chiS) [Vibrio furnissii strain FDAARGOS_777]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLSAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGVDIDQAREHAQQRYVTGSGDEVKTSVLPESSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDITGNVVYSIYKRENYGTNLLTGRFKDSNLGQTFRQLEQQVSEHRKTNEDYTPVVLSDFVDEQGRQFAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNTTSSMRTLLVGQDHRSRTLAYDQPEIDKSTQVIDWALNGSRSVGTYTNLDDEK
TIAAYAPINLKDLHWALVVELPEKEAFARIRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALTSGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRI
INQVAEEAPVWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISATRVDQHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDT
SRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPMASDDEIAQAQLTQQPHFQAPELTELDLPDHHSIPENP
TGPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAALPVI
MLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAEQRRLENAELQKELKHRAMVEASLLETQGRLLEQL
ESAPEAIVCIREDNKVRFANDAAARLFKRSQEQLKRSNADELIGQKYLLVEQDHYCGNVDIFIDDTRQHVNADVLRLPKG
AGLQAMYIFNVGGNINAARIHNLETAVEALSSYAFDGDKDKLQQLKELGGEFTRLADKASGDGQSKQELMRSVLVDAMTS
ALNYWERVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQR
DKLQKLLTSE

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=368542 FIU11_RS15340 WP_038152685.1 3170659..3174051(+) (chiS) [Vibrio furnissii strain FDAARGOS_777]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAAAATACCCTCATGCTCGCGTTCTTGGTTCTTAGCATCAC
CCCATTGACGGTGACGGCGATTTTTTTCCTTCAATCTCACAGTAAAGATCTTCAGGAACAAAGCACATCGCACCTTCTTT
CGGTCCGTGATACGAAACAACAGCAAGTCATCGACTACCTCAGCGCGAAAGAGTCTGAAGTCATGGGCTTTGTTCGCTCA
GAACTGGCTTACGCCAGTGGCGGGCGTTTCTATGGTTTAGTGAACGCATTTCAACGCTTAGGCGTTGATATCGACCAAGC
ACGAGAGCATGCACAGCAGCGTTACGTCACCGGTTCTGGTGATGAAGTCAAAACCTCCGTGCTACCAGAATCGAGCAGTT
ATGTCGGCAGTGAGCGCTATCGCCTCCTGCACAAACGCTACCATTGGGCCTATCTCGAGCTACTCAAACGGTCCGACTTT
GATGACATCCTGTTGGTCGATATCACCGGCAACGTGGTGTATTCCATCTACAAACGTGAGAACTACGGCACCAACTTGCT
CACGGGGCGATTCAAAGACAGTAACTTGGGGCAAACCTTCCGCCAGTTGGAACAGCAAGTCAGTGAGCATCGAAAAACCA
ACGAAGATTACACACCAGTGGTGTTGTCGGACTTTGTCGATGAACAAGGCCGTCAATTTGCTTGGATGGGCGCCCCCATT
ATTCAACAAGGCTATCTGCACAGCTACGCCATGTTCCGTTTACCCAACAACGGCATCACCAAGCTGATCGCAGACACCAA
CACCACGTCATCGATGCGCACGTTATTGGTCGGTCAGGATCATCGTTCACGCACGCTGGCTTATGATCAACCGGAAATCG
ATAAAAGTACGCAAGTGATTGATTGGGCGCTCAATGGCAGCCGATCCGTCGGCACGTACACCAACCTTGATGACGAGAAA
ACCATCGCCGCTTACGCGCCGATCAATCTCAAGGATCTGCATTGGGCGTTGGTGGTCGAACTGCCTGAAAAAGAAGCTTT
CGCACGCATTCGTCAACTGGAAAAACTGTTCATCTTCGCGATGCTGACTGCCATTATTTTGGTGGTGATTGCCTCACATT
ACCTATCGAATTTCATCACCTCACCCCTGCTAAAACTGACATGGGCCGCTGAACGCGTGTCGGCTGGTGATTTAGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGGCGACTGGCGGTTAGTTTTGAACGCATGCAGCGCTCGATTCGCGA
AAAAATGCAGCTAATTAAGGCGCAGAATAAAGAGCTCGAAAGCAACATTCAGGTCATCCGTAAACAGAATGATGAGTTGC
AACTGGCCAACAAACTCAAAGATGAGTTTCTGGCCACAACATCCCATGAGCTGCGAACCCCGCTGCATGGCATGATCGGG
ATTGCCGAAGCACTGACTTCCGGCGCCAATGGCCCAATCAACGCTGCGCATAAGTATCAACTCGACATCATCATCAGCAG
CGGACAACGTTTGGCCACGCTGGTCGATGACCTACTCGATTACCACAAAATGCGTTATGGCAATCTGGATATTCATCGCA
CGGCTGTCAATCTCTCTAATGCCACACGTTTGGTTTTGGAGCTGTCAAATCACCTGTTGGGTAAAAAACAGATTCGCATC
ATCAATCAGGTCGCAGAAGAAGCGCCGGTATGGGTCTCTGCTGATGCGCAGCGTCTTGAGCAAGTGTTGTACAACTTGAT
TGGCAACGCGATCAAATACACCTCCGAAGGCAAGATTGTCATTTCTGCCACTCGCGTTGACCAACACATTCGCGTACAAG
TGGTGGATACCGGACAAGGGATTCCGGCAGAGCAATTGGAACATATTTTCGAACCCCTGATTCAAGCCGGGCACGACACC
AGTCGCTACCGCCAAGGGGCCGGACTGGGCCTCTCGATCAGCCGTCAGTTGATCGAGCTGATGCAAGGGTCGCTGTATGT
CAGCAGTCAACCCATGGTCGGAACGACGTTTAGCTTCACACTGCCGATGGCCTCTGACGACGAAATCGCCCAAGCGCAGT
TGACGCAACAACCGCACTTCCAAGCGCCTGAATTGACTGAACTGGATCTGCCAGACCATCACAGCATTCCGGAGAATCCA
ACCGGGCCGTTGCTCTTGGTGGCTGATGATGAGCCGGTGAACTTACGCGTGCTCGATAGCTTCCTGCGTCTTGAAGGCTA
TCGCGTGCGCACCGCTCAGGATGGGAACGAAGTCCTGCAGGCCGTCGCAGAAGAGAAACCTGAATTGTTGCTACTGGACA
TCATGATGCCCGGCATGAGCGGCTATCAGGTGTGTGAAGAGCTGCGTAAAACGTACGATCATGCAGCGTTGCCAGTCATC
ATGCTCACCGCGCTCAATCAATCCGATGACCGAGTGCGCGGCTTTGAAGCCGGCGCCAACGATTATCTATCCAAACCGTT
CAATAAGCAGGAATTAGCCGCCCGTATCGTCGCGCACCTGACCGCAAGTAAAGCGGAACAACGTCGCCTTGAGAACGCGG
AACTGCAAAAAGAACTCAAACATCGCGCCATGGTGGAAGCAAGCTTGCTGGAAACACAAGGCCGACTGCTGGAACAGCTG
GAATCCGCGCCAGAAGCGATTGTGTGCATTCGGGAAGACAACAAAGTTCGCTTTGCCAATGACGCCGCAGCGCGCCTGTT
TAAACGCAGTCAGGAACAGCTCAAACGCTCCAACGCTGACGAATTGATTGGGCAAAAATACTTATTGGTCGAACAGGATC
ACTATTGTGGCAATGTCGACATCTTCATCGACGACACGCGCCAACACGTGAACGCCGATGTCTTGCGCCTGCCCAAAGGT
GCTGGATTACAAGCGATGTATATCTTTAATGTCGGCGGTAACATTAACGCGGCGCGCATCCACAACCTTGAAACGGCGGT
TGAAGCCCTATCAAGTTACGCGTTTGACGGTGACAAAGATAAATTGCAACAGCTCAAAGAGCTGGGCGGTGAATTCACAC
GCTTAGCCGACAAAGCCTCCGGTGACGGCCAATCCAAACAAGAGTTGATGCGTTCCGTGCTGGTCGATGCCATGACCTCC
GCCCTCAACTACTGGGAAAGAGTCTCCGGTCAAAGCAAGTTCACCTTTGCTGAACAAAGTGGGCTGTGGCGCGTCTACCT
CGATCGCAGTACGCTGCAAACTCGAACACTCGACAAATACCTGCGTATCGAAACACTGCCTAAAACGCCGCGTTGGCGCA
CCGTGCTTAACTCGTTAGATTACATTCTGGATCACTGCCAGGAACAAGGACCAGAACGCACTTACATTGAAGTGCAACGG
GATAAGTTACAAAAGCTACTGACGTCAGAATAA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(375-427)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(575-683)

Response regulator receiver domain (Response_reg)

(726-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

84.159

100

0.842

Multiple sequence alignment