Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   SSPS47_RS25860 Genome accession   NZ_CP048397
Coordinates   5797699..5798484 (-) Length   261 a.a.
NCBI ID   WP_147878172.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5792699..5803484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS25845 (SSPS47_26140) - 5792783..5793532 (+) 750 WP_164253057.1 GNAT family N-acetyltransferase -
  SSPS47_RS25850 (SSPS47_26145) - 5793743..5795527 (+) 1785 WP_164255009.1 IucA/IucC family siderophore biosynthesis protein -
  SSPS47_RS25855 (SSPS47_26150) - 5795566..5797536 (+) 1971 WP_164253058.1 ATP-dependent DNA helicase -
  SSPS47_RS25860 (SSPS47_26155) dinR/lexA 5797699..5798484 (-) 786 WP_147878172.1 transcriptional repressor LexA Regulator
  SSPS47_RS25865 (SSPS47_26160) nrdR 5799017..5799526 (+) 510 WP_164253059.1 transcriptional regulator NrdR -
  SSPS47_RS25870 (SSPS47_26165) - 5799767..5802664 (+) 2898 WP_164253060.1 vitamin B12-dependent ribonucleotide reductase -
  SSPS47_RS25875 (SSPS47_26170) - 5802811..5803338 (-) 528 WP_164253061.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28338.07 Da        Isoelectric Point: 7.4238

>NTDB_id=368541 SSPS47_RS25860 WP_147878172.1 5797699..5798484(-) (dinR/lexA) [Streptomyces sp. S4.7]
MTTTADSATITAQDRSQSRLEPVHPMNDAATNPEGVKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLIGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNAAY
QPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=368541 SSPS47_RS25860 WP_147878172.1 5797699..5798484(-) (dinR/lexA) [Streptomyces sp. S4.7]
GTGACCACCACCGCAGACAGCGCCACCATTACCGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATCCCATGAA
TGACGCAGCCACGAATCCGGAGGGCGTAAAGCCCACTCGCTCGCTGCCCGGCCGACCTCCCGGAATCAGGGCGGACAGCT
CCGGTCTCACGGACCGGCAGCGGCGGGTCATCGAAGTCATCCGCGACTCCGTGCAACGACGGGGATATCCGCCGTCGATG
CGCGAGATCGGTCAGGCCGTCGGCCTGTCCAGCACATCTTCCGTCGCCCATCAGTTGATGGCTCTGGAGCGCAAGGGATT
CCTGCGCAGGGATCCGCACCGGCCGAGGGCCTACGAGGTCCGGGGCTCCGACCAGCCCAGCACCCAGCAGACGGACACGA
CCGGCAAGCCCGCCGCGTCGTACGTACCGTTGATCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCCGAGGAATCCGTC
GAGGACGTGTTCCCGCTGCCGCGCCAACTGGTCGGTGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGAGACTCGATGAT
CGAAGCGGCGATCTGCGACGGCGACTGGGTGACGGTCCGCCGTCAGCCCGTGGCCGAGAACGGCGACATCGTGGCCGCGA
TGCTGGACGGTGAGGCCACCGTGAAGCGCTTCCGGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCCGGCGACGACGCGACAATCCTCGGCAAGGTTGTGGCGGTCCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379