Detailed information NTG0368540

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FIU11_RS09330
• Genome accession: NZ_CP040990
• Coordinates: 1874090..1875511 (-)
• Length: 473 a.a.
• NCBI ID: WP_004726195.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain FDAARGOS_777
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1869090..1880511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU11_RS09315 (FIU11_09315)	cdd	1871908..1872795 (-)	888	WP_004726199.1	cytidine deaminase	-
FIU11_RS09320 (FIU11_09320)	-	1873004..1873684 (-)	681	WP_004726197.1	LrgB family protein	-
FIU11_RS09325 (FIU11_09325)	-	1873675..1874049 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
FIU11_RS09330 (FIU11_09330)	sbcB	1874090..1875511 (-)	1422	WP_004726195.1	exodeoxyribonuclease I	Machinery gene
FIU11_RS09335 (FIU11_09335)	-	1875675..1877060 (-)	1386	WP_004726194.1	L-cystine transporter	-
FIU11_RS09340 (FIU11_09340)	-	1877262..1877945 (-)	684	WP_004726193.1	NAD(P)H-binding protein	-
FIU11_RS09345 (FIU11_09345)	-	1878361..1878972 (+)	612	WP_004726192.1	flavin reductase family protein	-
FIU11_RS09350 (FIU11_09350)	cobT	1878986..1880014 (+)	1029	WP_004726191.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54344.71 Da
• Isoelectric Point: 4.8902

>NTDB_id=368540 FIU11_RS09330 WP_004726195.1 1874090..1875511(-) (sbcB) [Vibrio furnissii strain FDAARGOS_777]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IDPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=368540 FIU11_RS09330 WP_004726195.1 1874090..1875511(-) (sbcB) [Vibrio furnissii strain FDAARGOS_777]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCAATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTTGATGATGA
AGTCACCCGCTACACCTGTTATCGCAACTTCCTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGAGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTCAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCAAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAATGATGTGGATACGCAGCTCTATGACGGATTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCTACGAACCCTGAACTGCTCGGTGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGACCCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCCGATTACATGTTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (10-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.227	99.577	0.829