Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   SSPS47_RS24880 Genome accession   NZ_CP048397
Coordinates   5561133..5563328 (+) Length   731 a.a.
NCBI ID   WP_164252940.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5556133..5568328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS24855 (SSPS47_25160) - 5556434..5557396 (+) 963 WP_147878296.1 thiamine-phosphate kinase -
  SSPS47_RS24860 (SSPS47_25165) thiD 5557430..5558257 (+) 828 WP_164252938.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SSPS47_RS24865 (SSPS47_25170) rpmB 5558438..5558623 (-) 186 WP_003957616.1 50S ribosomal protein L28 -
  SSPS47_RS24870 (SSPS47_25175) - 5558883..5560562 (+) 1680 WP_164252939.1 DAK2 domain-containing protein -
  SSPS47_RS24875 (SSPS47_25180) - 5560700..5561035 (+) 336 WP_147878293.1 cupin -
  SSPS47_RS24880 (SSPS47_25185) recG 5561133..5563328 (+) 2196 WP_164252940.1 ATP-dependent DNA helicase RecG Machinery gene
  SSPS47_RS24885 (SSPS47_25190) rsmD 5563516..5564097 (+) 582 WP_164252941.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SSPS47_RS24890 (SSPS47_25195) coaD 5564124..5564603 (+) 480 WP_187280368.1 pantetheine-phosphate adenylyltransferase -
  SSPS47_RS24895 (SSPS47_25200) - 5564739..5565953 (+) 1215 WP_164252942.1 cell division initiation protein -
  SSPS47_RS24900 (SSPS47_25205) - 5566150..5566758 (+) 609 WP_147878288.1 DUF177 domain-containing protein -
  SSPS47_RS24905 (SSPS47_25210) rpmF 5566761..5566934 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  SSPS47_RS24910 (SSPS47_25215) rnc 5566954..5567829 (+) 876 WP_147878287.1 ribonuclease III -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 78720.48 Da        Isoelectric Point: 6.3676

>NTDB_id=368536 SSPS47_RS24880 WP_164252940.1 5561133..5563328(+) (recG) [Streptomyces sp. S4.7]
MDRVSALDESLKKTLGPATAKVMAEQLDLHTVGDLLHHYPRRYEERGQLTRLADLPLDEDVTVVAQVADSRILKFNGGRG
QRLEITLTDGSGRLQLVFFGRGIHKPHKDLLPGSRGMFAGKVSLFNRKLQLAHPTYAPLGTDSGDEAVDAFAGKLIPIYP
ACKGLESWKITKAVDAVLPRATEAVDPLPPSLREGRGFVPLPEALMKVHRPDTKADVAAARDRLKWDEAFVLQVALARRR
HADAQLPAMARRPVAGGMLDAFDAKLPFTLTDGQLKVTREIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLTVVDAGGQ
AAMLAPTEVLAQQHHRSITEMMGQLAEGGMLGGAETATKVVLLTGSMGAAARRHALLDLVTGEAGIVIGTHALIEDKVRF
HDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHF
LARAWERVREEVGKGHQAYVVCPRIGDGEDEPKKKAAAKAAEADGDKRPPLAVLEIAGQLAAGPLAGLCVEVLHGRMQPD
DKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPETSPARARL
GAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAAAREEAVAVVAADPELEALPALRTALDALL
DTEREQYLDKG

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=368536 SSPS47_RS24880 WP_164252940.1 5561133..5563328(+) (recG) [Streptomyces sp. S4.7]
ATGGATCGCGTGTCCGCGCTGGATGAATCACTCAAGAAGACGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCAGCT
GGATCTGCACACGGTCGGCGATCTGCTGCACCACTACCCGAGGCGGTACGAGGAGCGGGGCCAGCTCACCCGCCTCGCCG
ACCTCCCGCTGGACGAGGACGTCACGGTCGTCGCCCAGGTCGCCGACTCACGCATCCTGAAGTTCAACGGCGGCCGGGGC
CAGCGGCTGGAGATCACCCTCACCGACGGCAGCGGCCGGCTCCAGCTGGTCTTCTTCGGCCGGGGGATCCACAAGCCCCA
CAAGGACCTGCTGCCCGGCAGCCGGGGCATGTTCGCGGGCAAGGTCTCCCTGTTCAACCGGAAGCTCCAGCTCGCCCACC
CCACGTATGCGCCGCTCGGTACGGACAGCGGCGACGAGGCCGTGGACGCCTTCGCGGGCAAGCTGATCCCGATCTACCCG
GCCTGCAAGGGACTGGAGTCCTGGAAGATCACCAAGGCGGTCGACGCCGTGCTGCCGAGGGCCACCGAGGCCGTCGACCC
ACTGCCGCCCTCCCTGCGCGAGGGCCGCGGCTTCGTACCGCTGCCCGAGGCGCTGATGAAGGTCCACCGGCCCGACACCA
AGGCCGATGTCGCGGCGGCCAGGGACCGGCTCAAGTGGGACGAGGCGTTCGTGCTCCAGGTCGCCCTCGCCCGGCGGCGG
CACGCGGACGCCCAACTCCCCGCGATGGCGCGGCGACCGGTGGCGGGGGGCATGCTCGACGCCTTCGACGCCAAGCTGCC
CTTCACCCTCACCGACGGCCAGTTGAAGGTCACCCGCGAGATCTTCGACGATCTGGCGACCGAGCATCCGATGCACCGCC
TCCTCCAGGGCGAGGTCGGCTCCGGCAAGACGATGGTCGCGCTGCGCGCGATGCTCACGGTGGTGGACGCGGGCGGTCAG
GCCGCGATGCTCGCGCCGACCGAGGTGCTCGCCCAGCAGCACCACCGCTCGATCACCGAGATGATGGGGCAGCTGGCCGA
GGGAGGCATGCTCGGCGGCGCCGAGACCGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGGGCGCGGCGGCGCGGCGGC
ACGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCACGCGCTGATCGAGGACAAGGTGCGGTTC
CACGACCTGGGTCTGGTCGTCGTGGACGAACAGCACCGCTTCGGGGTCGAGCAGCGCGACGCCCTGCGCTCCAAGGGCAA
GCAGCCGCCGCATCTGCTGGTCATGACGGCGACGCCCATTCCCCGCACGGTCGCCATGACCGTCTTCGGCGACCTGGAGA
CGTCCGTCCTGGACCAGCTGCCCGCCGGGCGCTCCCCGATCGCCACCCATGTCGTACCGGCGCAGGACAAGCCGCACTTC
CTGGCGCGTGCCTGGGAACGGGTTCGCGAGGAGGTCGGCAAGGGACACCAGGCGTACGTCGTCTGCCCCCGGATCGGTGA
CGGCGAGGACGAGCCGAAGAAGAAGGCCGCGGCGAAGGCGGCCGAGGCCGACGGTGACAAACGTCCGCCGCTGGCCGTGC
TGGAGATCGCAGGGCAGCTCGCCGCCGGGCCGCTGGCCGGCCTGTGTGTCGAGGTGCTGCACGGCCGTATGCAGCCCGAC
GACAAGGACGACGTGATGCGCCGCTTCGCCGCGGGCGACGTGGACGTCCTGGTCGCCACCACCGTCATCGAGGTCGGTGT
CAACGTCCCCAACGCCACGGCCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCTCAGCTGCACCAGTTGCGCGGCC
GGGTGGGCCGGGGCTCCGCCCCGGGCCTGTGCCTGCTGGTCTCGGAGATGCCGGAGACGAGCCCCGCGCGGGCCCGTCTC
GGCGCGGTCGCCTCGACCCTCGACGGCTTCGAGCTCTCCCGTATCGACCTCGAACAGCGCCGCGAGGGCGACGTCCTCGG
CCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGATGCTCGCGGTCATCGAGGACGAGGAAGTCATCGCGGCGGCCAGGG
AGGAGGCCGTCGCCGTCGTCGCCGCGGACCCGGAGCTCGAAGCCCTCCCGGCGCTGCGTACGGCACTGGACGCCCTGCTG
GACACGGAGCGGGAGCAGTATCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-444)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(646-707)

RecG wedge domain (RecG_wedge)

(13-173)

Helicase conserved C-terminal domain (Helicase_C)

(547-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.329

94.938

0.364

Multiple sequence alignment