Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FIU11_RS05290 Genome accession   NZ_CP040990
Coordinates   996488..997006 (+) Length   172 a.a.
NCBI ID   WP_004723869.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 991488..1002006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS05280 (FIU11_05280) gshA 994290..995855 (+) 1566 WP_004723866.1 glutamate--cysteine ligase -
  FIU11_RS05285 (FIU11_05285) - 995857..996462 (+) 606 WP_004723868.1 hypothetical protein -
  FIU11_RS05290 (FIU11_05290) luxS 996488..997006 (+) 519 WP_004723869.1 S-ribosylhomocysteine lyase Regulator
  FIU11_RS05295 (FIU11_05295) - 997113..998387 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  FIU11_RS05300 (FIU11_05300) - 998478..999272 (-) 795 WP_004723874.1 cytochrome C assembly family protein -
  FIU11_RS05305 (FIU11_05305) ffh 999485..1000864 (+) 1380 WP_004723876.1 signal recognition particle protein -
  FIU11_RS05310 (FIU11_05310) rpsP 1001090..1001338 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  FIU11_RS05315 (FIU11_05315) rimM 1001366..1001920 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18886.62 Da        Isoelectric Point: 4.6766

>NTDB_id=368530 FIU11_RS05290 WP_004723869.1 996488..997006(+) (luxS) [Vibrio furnissii strain FDAARGOS_777]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVITAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=368530 FIU11_RS05290 WP_004723869.1 996488..997006(+) (luxS) [Vibrio furnissii strain FDAARGOS_777]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCTGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTACCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCG
TTGCCCGAATCGATGCTTAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.698

100

0.907

Multiple sequence alignment